SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60666

Length: 713 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60666

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease-like protein [Arabidopsis thaliana] gb\|AAG50814.1\|AC079281_16 hypothetical protein [Arabidopsis thaliana] gb\|AAM20575.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15613.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF00436.1\| hypothe	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	aspartic proteinase nepenthesin-1-like	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
327		66	33		0.997452
333		33	66		0.997452
343	66		33		0.997452
352			33	66	0.997452
355			33	66	0.997452
358		66		33	0.997452
469	75		25		0.996473
545		75	25		0.996473
570		25	75		0.996473
612		75	25		0.996473
648		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain