SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60652

Length: 1342 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60652 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12810, Gly_rich, Glycine rich protein	-	-	3.0e-06	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	nucleic acid binding	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	70%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	peroxisomal membrane	GO:0005778	Cellular Component	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP57

Fln msg:

Fln protein: MANSGAPPKPWERVGGSSGPSPFRSPSIGNSTNNVGESCGDTKPEEKNDNIQSYLPSRNGGIVARPVPQRPWERNSGGYGTMTNYNAGNGSGMYGYNSPYGGNLGGTYAGGLSGNSMYRAGYGGLNGGYGSNAIGGMYNNGYGGPLGGYGMGQVGPYGYGSQDPNNSSGGSPPSPPRFWQSMLHVMHGVVTFFGRVSILVDENTQAFHFFITALLQLFDRSGVLYGEVAPFVLRLLGSLRRPRIRPQGGSEALPGQGTSARNFVENPKQLAGPWDNIWQDKGGRPQ*

Protein Length: 288

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCAATCATGCATGGATGCGTAAAGCGTCGTGACCTTGGCTGTCACTCAATTTTTGATTATTGCAACAAGGAGTTGGCCCGGATTATTCCACCATGACGAACGACTGAATGTCTGTGCAGATAGTCTTGTC_-_ATGGCGAATTCTGGTGCACCACCAAAGCCTTGGGAGCGAGTTGGAGGGTCTTCTGGTCCTTCTCCATTTAGATCGCCGTCAATTGGCAATAGCACAAATAATGTTGGAGAGTCATGCGGAGATACAAAACCTGAAGAGAAAAATGACAACATACAAAGCTATCTACCTTCTCGCAATGGTGGCATTGTTGCCAGGCCTGTGCCACAAAGGCCATGGGAACGGAACTCTGGAGGATATGGAACGATGACAAATTATAATGCAGGAAATGGCTCTGGTATGTATGGCTATAATAGTCCATATGGTGGGAATCTTGGAGGAACATATGCAGGTGGTCTTTCTGGAAATAGTATGTATAGAGCAGGCTATGGTGGGTTGAATGGGGGATATGGATCTAATGCGATAGGTGGTATGTACAATAATGGGTATGGAGGACCATTGGGTGGGTATGGAATGGGCCAAGTTGGTCCATATGGCTATGGCAGCCAAGATCCAAACAATTCATCTGGTGGATCTCCTCCTTCACCGCCAAGATTTTGGCAATCTATGCTCCATGTGATGCATGGGGTTGTGACATTTTTTGGTCGGGTTTCTATCCTTGTTGATGAAAATACTCAGGCATTTCATTTTTTCATAACGGCCCTTCTTCAGCTATTTGATCGCTCTGGTGTATTATATGGCGAGGTTGCACCCTTTGTGTTAAGATTGCTTGGTTCTTTGAGACGACCACGAATCAGACCTCAAGGGGGAAGCGAAGCACTTCCAGGGCAAGGGACATCTGCTCGCAATTTTGTTGAAAACCCTAAGCAGTTAGCTGGTCCCTGGGACAATATCTGGCAGGACAAAGGTGGTAGGCCACAGTAA___CAATCTGCAGCGATCCCTGTGGTTACATTGCTCAATGATTTTTCAGTAGATTTCCGAAAAATAATAGCCATGTGAATTCATGTTTTGGGTGTCCTTTGCTTGTATTGATACTTGTTGTCTCCCTTTATTGTGGGGAATATAAAGGAAGTTCAAGTTATAGACATGGAAAAGATCAAACCAAGAAAACAGCTTTAAAGGGACCTAAGGTGCACTTTTATAAATGATTATTTCAGTCTGTTTCATAGACATAGAATGGTGCCATTTGCTGATAATAAaGCAATAATGCTAATTGTTTTATTATATTTGCTTCGTTGAGTTTGGTAC

Fln Alignment:

AllPineV4_rep_c64854___MANSGAPPKPWERVXXXXXXXXXXXXSIGNSTNNVGESCGDTKPEEKNDNIQSYLPSRNGGIVARPVPQRPWERNSGGYGTMTNYNAGNGSGM---------------YGYN---SPXXXXXXXXXXXXXXXXSMYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSQDXXXXXXXXXXXXPRFWQSMLHVMHGVVTFFGRVSILVDENTQAFHFFITALLQLFDRSGVLYGEVAPFVLRLLGSLRRPRIRPQGGSEALPGQGTSARNFVENPKQLAGPWDNIWQDKGGRPQ
A9NP57_______________MANSGAPPKPWERVGGSSGPSPFRSPSTGNGTNNVGDSCGDTKPEEKNDNIQRNLPSGNGGIVARPMPQRPWERNSGGYGTMTNYNAGNGSGMYGYNSPYGGNLGGSSYGGNLGGSSYGGNLGGTYAGGLSGNSMYRAGYGGLNGGYGSNAIGGMYNNGYGGPSGGYGMGQVGPYGYGSQDPNNPLGGSPPSPPSFWQSMLRVMHGVVTFFGRVSILVDENTQAFHFFITALLQLFDRSGVLYGELARFVLRFLGFWGRPRIRPQGGSEALP---------------VAAPWDNTWQDKGGRPQ

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1234	78	15		5	1.0
1236		15		84	1.0
1237		16	83		1.0
1238	16		83		1.0
1271	72	27			1.0
1272	72	27			1.0
1273		27		72	1.0
1275	88	11			0.923589
1276	50	12		37	1.0
1277	66	16		16	0.988857
1278	83	16			0.994513
1279	83	16			0.994515
1284		33	66		0.997452
1290			66	33	0.997452
1291		66		33	0.997452
1294	66			33	0.997452
1304		75		25	0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain