SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60637

Length: 1137 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60637

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative phi-1-like phosphate-induced protein [Arabidopsis thaliana] gb\|ACG24330.1\| phi-1-like phosphate-induced protein [Zea mays]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	uncharacterized protein loc100259041	-	-	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUB5

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 324 - 358

Fln protein: MACSFSWLRLSALLHIAVCIVILSAVPASGQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVRRSIGWDSISWSSGVRGDKK*TLRVCLVEDH*EVCGRSL*QGGAFQCYNARKAEGRPTS*PWLSLKRADIASLVEAAVKSRSLPLPRPRPLHENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPNGDMGIDGMIINIATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVD

Protein Length: 325

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAGCAATCGGTTTTCACTTGTCGCCTATTTGTGTTTTCACCTTGTGTTTGTAACAAGCTATCGAGGTTACTGTGGTTTGTTCCTCTGAATCCAAGGGAGCTCGCGTCTCTTTGCTGTGTGATAGATAGAGAGCGTTAAA_-_ATGGCTTGTTCTTTTTCTTGGCTTCGACTGTCTGCCTTGCTACATATAGCGGTGTGTATAGTGATATTATCTGCAGTCCCTGCTTCTGGACAGTCGAGAAAACTTGGGGCTTTGGTGGAAGGGCCATCTGTTGTCTTGACTTACCACGATGGTCCTCTGCTCTCTGCCAGTGGATTGACCCAACTCCACGTAATCTGGTATGGGAAATTCACCCCTGTTCgtCGttcCaTTGgctGggACTCAaTcTCTTGGAGCAGTGGCGTTAGAGGGGACAAGAAGTAAACCCTCCGCGTCTGCTTGGTGGAAGACCACTGAGAAGTATGTGGGCGCAGCCTCTAACAAGGCGGAGCCTTCCAGTGTTATAATGCTAGGAAAGCAGAAGGTAGACCAACGTCGTGACCTTGGCTGTCACTCAAGAGGGCTGACATTGCTTCTCTAGTTGAAGCTGCTGTTAAGTCGAGATCTCTGCCTCTGCCTCGGCCTCGGCCTCTACACGAGAATAAAGCGACAAAAGAAAATGCTGTATACTTGGTGCTTACCTCTGAGGATGTTGCCGTTGAGGGTTTCTGCATGAGTTCCTGCGGATTCCATGACAGTCTCAATGTATTATCACACCAGAAGGCAACAAGAAACCGAACGACGGGGAAGGAGAAGGAGAAGGAGCCTCGTCATCTTTTACCATACGCGTGGGTTGGGAACTCTGCAAGTCAGTGTCCTGGACAGTGCGCATGGCCATTTCATCAACCCATGTATGGACCCCAGACTCCCCCTTTGGTGGCACCAAACGGTGACATGGGTATCGATGGGATGATAATCAACATTGCCACCGTTCTTGCAGGAGCAGCTACTAATACATTTAACAACGGCTATTTTCAAGGGGACTCTGCTGCGCCTCTAGAGGCGGTGTCTGCCTGTACGGGAATATATGGAAAGGGGGCTTATCCTGGGTTTCCCGGTGAGCTATTAGTTGATA

Fln Alignment:

AllPineV4_rep_c64737___ACSFSWLRLSALLHIAVCIVILSAVPAS--GQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVXXXXXXXXXXXXXXVRGDKK*TLRVCLVEDH*EVCGRSL*QGGAFQCYNARKAEG------RPTS*PWL-------------SLKRADIASLVEAAVKXXXXXXXXXXXXHENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPXXXXXXXXXXXXXATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVD
A9NUB5_______________SCSVSWLRFLARLQMAVCMAMLFASSASSAGQSRKLAALVEDPSVVLTYHDGPLLSTSGIIPVHLIWYGQFTPVQRS-----------IVGDFLQSLGAKKLE------GKTMESSTSTWWKTIEKYEGVGKNNAAPSSVIMLGKQKVDQDYSLGKSLKRTDIAALVQAAVKSGVLPSPLPEINAENA----NAVYLVLTSEDVTVEGFCMNSCGFHASLNLLSNHKSTGSRMMGKEEKHQ--QLLPYAWVGNSASQCPGQCAWPFHQPIYGPQTPPLVAPNGDVGIDGMIINIATVLAGAATNPFNTGYFQGDAAAPLEAVSACPGIYGKGSYPGFPGELQVD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
905		94		5	0.998744

SSRs (tot: 1)

Start position	End position	Sequence	Length
809	827	GAAGGA GAAGGA GAAGGA G	19

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain