SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60620

Length: 1167 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60620 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short-chain type dehydrogenase/reductase n=1 Tax=Picea abies RepID=SDR1_PICAB	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	short-chain type	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alcohol dehydrogenase (NADP(+)).	EC:1.1.1.2	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	78%
Blast2go	Glycerolipid metabolism	00561	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	alcohol dehydrogenase (NADP+) activity	GO:0008106	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABB4

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 257 - 276

Fln protein: MGMPLEGRVAIVTGASGGIGKDIAIHLAEKGAKVVVHYSSNQAAAEEVASKINNSASSGDGVRAIVCKADVAEPSQVAHLFDTAEQTFGTLHIVVNNAGVADSNYSSLAQTSDEDWDRIFQVNCKGAFLCSREAANRVVRGGGGRIINLSSSLVGLPTPGSGSYTASKAAVEMMTRILAQELRGTHITANCVAPGPVATDMFLTGRSAAAVEAAAKSSPFDRLGKVEDVAPVVAFLVSDEGEWVNAQVVRVNGGRV*

Protein Length: 258

Fln nts: AATGTACACTCTGACCAAGTTTACAGTGTTTAAGAATACATTGTTAAATTTGCAATTTCGATCCAATTCAAACCCTAGGGCAAGGTGCAATTATCGGGAAATCAAGTTTCCGGATTTTCAATTTGGGCGTTTTAGCTGGGCTTTACCCCACAAGACGAGAAAAGA_-_ATGGGAATGCCTTTAGAAGGGCGAGTTGCCATCGTGACAGGTGCGTCTGGCGGGATCGGCAAGGATATCGCCATCCATTTAGCAGAGAAGGGAGCCAAAGTGGTCGTCCATTACTCCTCCAATCAAGCAGCAGCGGAAGAGGTGGCCTCCAAAATCAATAATTCGGCTTCTTCCGGTGACGGTGTTCGGGCGATTGTGTGCAAAGCCGATGTGGCAGAGCCCTCCCAGGTCGCCCACCTATTCGACACGGCTGAGCAAACGTTTGGGACCCTCCACATCGTGGTAAACAATGCAGGAGTGGCGGACTCAAACTATTCCTCCCTCGCGCAGACCTCCGATGAGGACTGGGACAGGATTTTCCAAGTGAATTGCAAAGGGGCTTTCCTTTGTAGCAGAGAAGCTGCTAACAGGGTTGTCCGCGGTGGCGGTGGTCGCATCATCAACCTAAGCAGCTCCCTGGTGGGGTTACCGACACCGGGGTCCGGCTCCTACACGGCCAGCAAGGCGGCGGTGGAGATGATGACGAGAATCCTGGCGCAGGAGTTGAGGGGCACTCACATTACTGCAAATTGCGTGGCGCCAGGCCCTGTTGCCACTGATATGTTCCTTACCGGGAGGAGCGCAGCGGCGGTGGAAGCGGCGGCCAAATCCAGCCCGTTTGATCGGTTGGGGAAGGTGGAAGACGTGGCTCCGGTGGTCGCGTTCTTGGTGAGCGATGAAGGAGAATGGGTTAATGCTCAGGTCGTCCGGGTCAATGGAGGCCGGGTTTAATTCCTATAACTGGATGGTTTCTCTCCACATTTTATTTTTTTCTGGATTATTCTACTGTGCTTTCAGACTTCACTTGGGGTTTTAATGGATTGTGTTCAGTCTTGTGTTTCAAGTGGTGTTTTGTTCATAAGATAAAGTAAATATTTAGCATACATTAAATTTCTGCTTTGGCTATTTAAGAGGTGTATGATGCGTACTGCAATTAATATGGGGCTGAAATATTGCAGCTCA

Fln Alignment:

AllPineV4_rep_c64647___QDEKR-MGMPLEGRVAIVTGASGGIGKDIAIHLAEKGAKVVVHYSSNQAAAEEVASKINNSASSGDGVRAIVCKADVAEPSQVAHLFDTAEQTFGTLHIVVNNAGVADSNYSSLAQTSDEDWDRIFQVNCKGAFLCSREAANXXXXXXXXRIINLSSSLVGLPTPGSGSYTASKAAVEMMTRILAQELRGTHITANCVAPGPVATDMFLTGRSXXXXXXXAKSSPFDRLGKVEDVAPVVAFLVSDEGEWVNAQVVRVNGGRV
D5ABB4_______________EEEKRGMTMPLEGRVAIVTGASRGIGREIALHLAEKGAKVVVNYSSNQGPAEEVASAINNLASSGDGVRAIVCKADVAEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEDWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINMSSSLVGMPIPGFGAYTASKAAMEMMTRILAQELRGTKITANCVAPGAVATDLFLAGRSKAAVEAVAESSPFERLGKVEDVAPVVAFLASDQGEWVNGQVVRVNGGRV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
613	88		11		0.999952
619	12		87		0.999964
658		18	81		0.999994
677	20		80		0.999996
690	80		20		0.999996
699	10	90			0.90298
700		80	20		0.999996
701	10		90		0.90298
702		90		10	0.90298
703		90		10	0.90298
736	12	87			0.992554
739	87	12			0.992554
740	87	12			0.992554
742		87		12	0.992554
757	33		66		1.0
771		85		14	0.993533
886	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain