SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60605

Length: 2139 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene60605
ATGGGGGTATACGTCGTGACCTTGGCTGTCACTCATATGGGACATTACCCTTATTCTGAATCTGTGAGGCTTCTCTGTCAGGTTCAGTTCGTATCTTAGGGTTCTTTTTTTCTTTCGATTTCTTGTGTCGCAAGGTTTTAGATCGCCAAGATGCGTGAAATCCTGCACATTCAGGGCGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTCTGTGATGAGCACGGAATCGATCCCACTGGGAGATACCAGGGCACTTCAGATCTACAGCTCGAAAGGGTTAATGTTTACTACAATGAGGCGAGCTGTGGGCGATTTGTTCCCCGTGCTGTGCTTATGGATCTGGAGCCTGGGACCATGGACAGTGTGAGGACCGGGCCTTATGGCCAGGTCTTTAGGCCTGATAACTTCGTTTTTGGCCAGTCCGGGGCTGGGAACAACTGGGCCAAGGGCCATTACACTGAGGGGGCTGAGCTCATTGATTCCGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGTCACTCTTTGGGGGGAGGCACTGGATCTGGAATGGGAACCCTCTTGATCTCCAAGATCCGAGAGGAATACCCTGATAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCCAAGGTGTCTGATACCGTGGTGGAGCCTTACAATGCTACACTTTCTGTGCATCAGCTGGTGGAGAATGCCGACGAGTGTATGGTGCTGGACAATGAGGCCCTCTACGACATCTGCTTCAGGACTCTCAAGCTCACGACACCTAGCTTTGGTGATTTGAACCATTTGATCTCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTTCCCGGCCAGTTGAACTCAGATCTGAGGAAGCTGGCAGTGAATCTGATCCCTTTCCCCCGTCTTCACTTTTTTATGGTGGGATTTGCCCCTTTGACCTCTCGTGGTTCACAGCAATACAGAGCCCTTACAGTTCCGGAGCTCACACAACAGATGTGGGATTCCAAGAACATGATGTGCGCTGCAGATCCACGTCATGGCAGGTATCTGACTGCATCTGCTATGTTCAGGGGCAAGATGAGTACCAAAGAGGTGGATGAGCAAATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCTAATAATGTGAAATCCAGTGCATGTGATATTCCACCAAAAGGCCTGTCCATGTCGTCAACATTCATTGGTAACTCGACATCCATTCAGGAGATGTTCAGGAGAGTAAGTGAGCAGTTCACTGCTATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAGGGCATGGATGAGATGGAGTTCACTGAAGCAGAGAGTAACATGAATGATTTGGTTTCTGAGTACATGCAGTACCAGGATGCCAGCGCAGAGGATGATGAATACTATGATGATGAAGAATCAGCTCAGGAGAGCTAGATATCGTTAGTTATTAGCTCACCATCAACAACAGCTAGTTGTTTCAACGCCTAGTAGTTGTTTGTGTGGATTTCATTTACATTTCTTGTTCTTTCATAGTCTGCTCTGCTCTACTGGAGGTTCAAGATTTGAATTCATAAGCTTTGTATACAACTCCATATGCTTTTGCTTTTGTTCAGTAGATGAATCATGACAATATTTTGAATTTGTTCGTCTGATATATAGCTACACTATATGCAGCACTGGCAGGTTTTTAATTTTGTTGGTCAGATATAATATTGGAAGACCATATTTTTCATTTTTACTACCTTGTGGCAACTGTGATTTTTACCACCTTGTGATAACTGTCCATGAGCTGATTATGGTTGTTTGTGTTGTTTGCGAGTTTCCTAGTGTCCGTTGTTCTAATTGTTAAAATAGATTGTCTATCTTATGTTGTAGAGTTGGCATGGATTTGTATCATCTGGTAGTTACTGGGGACATTTAGATAGATTATAATGTATGTGCATGGTGCCAAGTTCTCTCTATATATATAACACTGTCAAATGTTAGTGGATTCTGTATATCAGGCACCGTTAAATGTTAATGAATTCTGTATGTCTGTATATGGACTGCTTTGTCTCCTTGGATTGTGAAAGTACTTCATGTTCT

Ace file of the UniGene sp_v2.0_unigene60605 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	beta-tubulin 2	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	99%
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg:

Fln protein: MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQYQDASAEDDEYYDDEESAQES*

Protein Length: 447

Fln nts: ATGGGGGTATACGTCGTGACCTTGGCTGTCACTCATATGGGACATTACCCTTATTCTGAATCTGTGAGGCTTCTCTGTCAGGTTCAGTTCGTATCTTAGGGTTCTTTTTTTCTTTCGATTTCTTGTGTCGCAAGGTTTTAGATCGCCAAG_-_ATGCGTGAAATCCTGCACATTCAGGGCGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTCTGTGATGAGCACGGAATCGATCCCACTGGGAGATACCAGGGCACTTCAGATCTACAGCTCGAAAGGGTTAATGTTTACTACAATGAGGCGAGCTGTGGGCGATTTGTTCCCCGTGCTGTGCTTATGGATCTGGAGCCTGGGACCATGGACAGTGTGAGGACCGGGCCTTATGGCCAGGTCTTTAGGCCTGATAACTTCGTTTTTGGCCAGTCCGGGGCTGGGAACAACTGGGCCAAGGGCCATTACACTGAGGGGGCTGAGCTCATTGATTCCGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGTCACTCTTTGGGGGGAGGCACTGGATCTGGAATGGGAACCCTCTTGATCTCCAAGATCCGAGAGGAATACCCTGATAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCCAAGGTGTCTGATACCGTGGTGGAGCCTTACAATGCTACACTTTCTGTGCATCAGCTGGTGGAGAATGCCGACGAGTGTATGGTGCTGGACAATGAGGCCCTCTACGACATCTGCTTCAGGACTCTCAAGCTCACGACACCTAGCTTTGGTGATTTGAACCATTTGATCTCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTTCCCGGCCAGTTGAACTCAGATCTGAGGAAGCTGGCAGTGAATCTGATCCCTTTCCCCCGTCTTCACTTTTTTATGGTGGGATTTGCCCCTTTGACCTCTCGTGGTTCACAGCAATACAGAGCCCTTACAGTTCCGGAGCTCACACAACAGATGTGGGATTCCAAGAACATGATGTGCGCTGCAGATCCACGTCATGGCAGGTATCTGACTGCATCTGCTATGTTCAGGGGCAAGATGAGTACCAAAGAGGTGGATGAGCAAATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCTAATAATGTGAAATCCAGTGCATGTGATATTCCACCAAAAGGCCTGTCCATGTCGTCAACATTCATTGGTAACTCGACATCCATTCAGGAGATGTTCAGGAGAGTAAGTGAGCAGTTCACTGCTATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAGGGCATGGATGAGATGGAGTTCACTGAAGCAGAGAGTAACATGAATGATTTGGTTTCTGAGTACATGCAGTACCAGGATGCCAGCGCAGAGGATGATGAATACTATGATGATGAAGAATCAGCTCAGGAGAGCTAG___ATATCGTTAGTTATTAGCTCACCATCAACAACAGCTAGTTGTTTCAACGCCTAGTAGTTGTTTGTGTGGATTTCATTTACATTTCTTGTTCTTTCATAGTCTGCTCTGCTCTACTGGAGGTTCAAGATTTGAATTCATAAGCTTTGTATACAACTCCATATGCTTTTGCTTTTGTTCAGTAGATGAATCATGACAATATTTTGAATTTGTTCGTCTGATATATAGCTACACTATATGCAGCACTGGCAGGTTTTTAATTTTGTTGGTCAGATATAATATTGGAAGACCATATTTTTCATTTTTACTACCTTGTGGCAACTGTGATTTTTACCACCTTGTGATAACTGTCCATGAGCTGATTATGGTTGTTTGTGTTGTTTGCGAGTTTCCTAGTGTCCGTTGTTCTAATTGTTAAAATAGATTGTCTATCTTATGTTGTAGAGTTGGCATGGATTTGTATCATCTGGTAGTTACTGGGGACATTTAGATAGATTATAATGTATGTGCATGGTGCCAAGTTCTCTCTATATATATAACACTGTCAAATGTTAGTGGATTCTGTATATCAGGCACCGTTAAATGTTAATGAATTCTGTATGTCTGTATATGGACTGCTTTGTCTCCTTGGATTGTGAAAGTACTTCATGTTCT

Fln Alignment:

AllPineV4_rep_c64526___MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQ
D5ABQ9_______________MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQ

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
748	89			2	1.0
750	91		8		1.0
756		4	12	82	1.0
757		12		87	1.0
761	10	6	2	74	1.0
762		4	95		0.995881
763	4	6		89	0.999986
764		13		86	1.0
767	12	2	2	82	1.0
769			13	86	1.0
788	87		6		0.993531
789	3			90	0.997544
790	3	90	6		0.997544
791	6	6	3	83	0.989159
794			7	92	0.999532
798	8			91	0.999766
802		89	10		0.999919
807		88	11		0.999937
990	14		85		0.993533
1190	85		14		0.993533
1480	83			16	0.994512
1988			6	93	0.99903
2117	61	38			1.0
2118	61	38			1.0
2119		38		61	1.0
2120	38	5	55		1.0
2122	22	44			1.0
2123	11	66	22		0.999999
2124	22	66	11		0.999999
2125	77	22			0.999999
2126	44	11		44	1.0
2128	25			75	0.99649
2141	66			33	0.997476
2142			66	33	0.997476
2143		33	66		0.997476
2149	66	33			0.997476
2151			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain