SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60550

Length: 675 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60550 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S27 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SLV7_PHYPA	-	-	9.0e-29	90%
FL-Next	sp=Ribosomal protein S27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	ribosomal protein s27	-	-	1.67109e-31	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.67109e-31	99%
Blast2go	cell wall	GO:0005618	Cellular Component	1.67109e-31	99%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	1.67109e-31	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S27e	IPR000592	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
295		25		75	0.996473
368	80	20			0.995493
369		20	80		0.995493
372	80			20	0.995493
399		25		75	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain