SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60498

Length: 837 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60498 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] ref\|NP_564279.1\| Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] ref\|XP_002890722.1\| hypothetical protein ARALYDRAFT_472929 [Arabidopsis lyrata subsp. lyrata] ref\|XP_00289	-	-	2.0e-08	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	membrane protein	-	-	9.12863e-16	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Endoplasmic reticulum, stress-associated Ramp4	IPR010580	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
204	66		33		0.997452
554		2		97	0.975753
601	1			92	1.0
695	3			96	0.999836
701	3		2	93	0.9524
704	2		97		0.999761
806	6	93			1.0
811	1	3	95		0.918242
824		14	85		1.0
825	89	8	2		1.0
826	87	8		4	1.0
828	4	2	2	69	1.0
830		23	2	74	1.0
831	2	27	47		1.0
832	51	48			1.0
833	23	25	51		1.0
834	2	23		74	1.0
835		30	66	3	1.0
837		66		33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain