SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60446

Length: 1242 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60446 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	82%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	glutathione peroxidase-like protein	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQB1

Fln msg:

Fln protein: MRPSVPSNLSRSFSVVPVLQAFLYKPFTPSVIPRAFHFLASPDTKLYSRFCSRFDPRIPSQDLDIFRLRFSANFTTMTGSSSKQSSSIYDFTVKDIRGNDVDLSVYKGKVLLIVNVASQCGLTNSNYTELNEVYTKYKDQGLEILAFPCNQFGGQEPGDNAQIAEVACTRFKAEFPIFDKVEVNGNNAAPLYKFLKSSKGGLFGDGIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLGIA*

Protein Length: 248

Fln nts: ATGGGGATCCTAGTTGATCCCGTCCGATATCCCTGTTCACACCTTAAACGCCGTTTTCCGACCTTTCTTGGCCCTCCTCTGATTCAGATCTATGCCCA_-_ATGCGGCCCAGCGTGCCTTCTAATCTTTCGCGTTCATTTTCTGTGGTACCTGTACTACAAGCCTTCCTATATAAACCCTTTACACCCTCTGTGATCCCTCGTGCCTTCCACTTTTTAGCTTCCCCTGATACCAAACTATATTCACGCTTTTGTTCTCGGTTTGATCCAAGAATACCTTCTCAAGATCTTGATATCTTCAGACTTCGGTTTTCTGCTAATTTTACAACCATGACTGGGAGCTCATCAAAGCAGTCTTCCTCCATCTATGACTTCACAGTCAAGGACATCCGGGGTAATGATGTGGATCTCAGCGTCTACAAGGGCAAGGTTTTGCTCATTGTCAACGTTGCCTCTCAATGTGGGTTGACTAACTCTAATTACACTGAGCTGAATGAAGTGTATACAAAGTACAAAGATCAAGGGTTAGAAATACTGGCTTTCCCATGCAACCAGTTTGGTGGACAAGAACCAGGTGATAATGCGCAGATTGCAGAAGTGGCCTGCACTCGCTTTAAAGCAGAGTTTCCCATATTTGACAAGGTCGAAGTTAATGGTAATAATGCAGCTCCTCTCTACAAGTTCTTGAAGTCAAGCAAAGGTGGGCTTTTTGGTGATGGAATAAAGTGGAACTTCACTAAGTTTCTGGTGGACAAAGATGGAAATGTTGTTGAACGATATGCACCCACTACGTCTCCATTGAGTATCGAGAAAGATGTCAAGAAACTGTTAGGAATTGCTTAA___TTCTTTGAAGGAGCAGACGTATGGTACACTTTCTGTTGCTAAAATAAAATAAGCAGCAACAATTTAGCTAGACATTGTTCTATGTTGCTGCACAAGGTTGAAGCAGACATTGTTATCAGTTCAGCAGTTCATTAAATTGCACGTTGCTGTTGCATACAGACAATATGTTATTTGTCATCTTTTAGATGCTTTCATCATCATCATAATGCTGACTATATTTTAATGCAATTTAAACTTCTTGAACTCTTATTACATGAAAAATACTGACATGTATCTTCTATATCCGTAACTTCTTGAAATCATATTGAAGAACATTACTTTGTCGGTTTCTCTAGAATTCGGTTTAAGGGATGAGGATGTGGACATGTAGATATTGTATTCTGAGAGCTTATAAATCAAGATA

Fln Alignment:

AllPineV4_rep_c63666___MRPSVPSNLSRSFSVVPVLQAFLYKPFTPSVIPRAFHFLASPDTKLYSRFCSRFDPRIPSQDLDIFRLRFSANFTTMTGXXXXXXXSIYDFTVKDIRGNDVDLSVYKGKVLLIVNVASQCGLTNSNYTELNEVYTKYKDQGLEILAFPCNQFGGQEPGDNAQIAEVACTRFKAEFPIFDKVEVNGNNAAPLYKFLKSSKGGLFGDGIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLGIA
A9NQB1_______________MQPCISSRLPRSFPAVPILQALLYKPLTPSIIPRAFHFRASPSTKISSRFCSWIKPRVPPQDFVIFRVGFSANFTAMTGSSSKQSTSVYDFTVKDIRGNDVDLSIYKGKVLLIVNVASQCGLTNSNYNELNEVYTKYKDQGLEILAFPCNQFGEQEPGDNAQIAEVACTRFKAEFPIFDKVEVNGSNAAPIYKFLKSSKGGLLGNGIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKNVKKLLGIA

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
568		10		90	0.90298
992		80	20		1.0
1046			84	15	0.999986
1131	75			16	0.99999
1134	75		25		1.0
1135			75	25	1.0
1137	25	75			1.0
1138	8	25			1.0
1140		66	25	8	1.0
1141	8	25	66		1.0
1143	25		8	66	1.0
1144	27		63	9	1.0
1147		72		27	1.0
1149	27		72		1.0
1151	63	9	27		1.0
1152	36			63	1.0
1153	9	27		63	1.0
1156			87	12	0.992554
1160	85	14			0.993533
1172		16	83		0.994512
1173	66	16			0.988813
1174		16	66	16	0.988815
1175		20	80		0.995493
1177		20	60	20	0.992586
1178	25		75		0.99649
1186	75			25	0.996483
1187	75	25			0.996483
1189		25	75		0.996479
1191	25			75	0.996479

SSRs (tot: 1)

Start position	End position	Sequence	Length
200	212	ATG ATG ATG ATG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain