SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60432

Length: 780 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60432 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abhydrolase_6 multi-domain protein	-	-	4.0e-15	15%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	polyneuridine-aldehyde esterase	-	-	0.0	60%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	0.0	60%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	60%
Blast2go	Drug metabolism - other enzymes	00983	60%
Blast2go	Metabolic pathways	01100	60%
Blast2go	Biosynthesis of secondary metabolites	01110	60%

Source	GOs	Term	Type	Identity
Blast2go	systemic acquired resistance	GO:0009627	Biological Process	60%
Blast2go	salicylic acid metabolic process	GO:0009696	Biological Process	60%
Blast2go	methyl indole-3-acetate esterase activity	GO:0080030	Molecular Function	60%
Blast2go	methyl salicylate esterase activity	GO:0080031	Molecular Function	60%
Blast2go	methyl jasmonate esterase activity	GO:0080032	Molecular Function	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
583			13	86	0.999973
595	85		14		0.999981
657		71	28		1.0
660		71		28	1.0
662	28		71		1.0
666		28	71		1.0
670			28	71	1.0
671			28	71	1.0
673		28		71	1.0
674	25		75		1.0
675		25		75	1.0
677	25			75	1.0
678		25	75		1.0
729	66		33		0.997452
734			25	75	0.996476
735	75		25		0.996476
737		25		75	0.996477
741			25	75	0.996477
742	25	25		50	0.995563
744			25	75	0.996477

SSRs (tot: 1)

Start position	End position	Sequence	Length
736	748	CTC CTC CTC CTC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain