SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60424

Length: 1687 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60424 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=57 Tax=Pinaceae RepID=CHSY_PINSY	-	-	96%
FL-Next	tr=Pinocembrin chalcone synthase; Pinus densiflora (Japanese red pine).	-	-	99%
Blast2go	chalcone partial	-	-	98%

Source	InterPros	Term	Type	Identity
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Chalcone/stilbene synthase, active site	IPR018088	-	-
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Polyketide synthase, type III	IPR011141	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9MBF0

Fln msg:

Fln protein: MAETLGLDLEAFSKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPQVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSQQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQQ*

Protein Length: 398

Fln nts: TATGGGGGTGGTTAGACAAGGACGACGAATCCATCGCAAGGAAGTCTGGGGTTACGTGTTTACAGTCCAACGTCTACTCTTAGCAACTTCTTCTCTTGGCAGAGCAAGTAGCTGGAGTTGGCGCTATATAACTTTACTCCATTCCTTCCTTCTTTCAAGGAAGGAAACCAGCGTGCCTGCTTCTCGTCGTTGCTTACTAGAATATCACAGCGAGCAATC_-_ATGGCTGAGACTTTGGGTTTGGATCTAGAGGCATTCAGTAAGGCTCAGAGGGCAGATGGCCCTGCCACCATCCTCGCTATCGGCACTGCAACGCCCCCCAATGCTGTCGACCAGAGCAGTTACCCTGATTACTACTTCAAAATCACCAACAGCGAGCATATGACGGAGCTCAAGGAGAAATTCAGAAGAATGTGCGACAAATCGGCGATAAAGAAGAGATACATGTATTTGACGGAGGAGATTCTGAAGGAGAATCCCAATGTCTGCGAGTACATGGCGCCATCGCTGGATGCACGGCAGGACATGGTTGTGGTGGAGGTGCCCAGGCTCGGAAAAGAAGCGGCTGCTAAGGCCATCAAGGAATGGGGGCAGCCCAAATCCAAGATTACTCATGTCATTTTCTGCACTACCAGTGGAGTCGATATGCCCGGAGCCGACTATCAGCTGACAAAGCTTCTTGGCCTCCGCCCTAGCGTTAAGAGAGTCATGATGTACCAACAGGGTTGCTTCGCTGGAGGCACCGTTCTCCGTGTGGCTAAGGATCTGGCAGAGAACAATCGGGGGGCTCGGGTTTTGGTCGTCTGCAGTGAAATCACGGCTGTCACTTTCCGCGGCCCCTCCGACACTCATCTCGACAGTATGGTCGGCCAAGCCCTCTTCGGCGATGGTGCGGCTGCGCTCATCGTGGGAGCCGATCCCGTCCCTCAAGTGGAGAAGCCCTGTTTCGAGCTGATGTGGACTGCACAGACCATTCTTCCCGACAGCGACGGAGCCATCGACGGGCACCTGAGAGAGGTCGGACTCACCTTCCACCTTCTCAAAGACGTTCCGGGGCTCATTTCCAAGAACATAGAAAAGAGTCTGGTGGAGGCCTTCCAGCAGTTTGGAATCTCCGACTGGAACCAGTTGTTCTGGATCGCCCATCCCGGAGGCCCTGCCATTCTGGACCAGGTGGAGGCAAAGCTGAATCTGGATCCCAAGAAACTGAGAGCAACGAGGCAAGTACTAAGCGATTATGGAAACATGTCAAGCGCGTGCGTGCACTTCATCTTGGACGAGATGAGGAAGTCCTCTCAGCAGAATGGGTGTTCGACAACCGGAGAAGGTTTGGATGTGGGAGTTCTGTTTGGATTCGGGCCAGGCCTCACCGTGGAAACAGTGGTCCTCAAGAGCGTTCCCCTGCAGCAATAA___CTCATATTGCCCACCACACCGTGTACTGAATTAGATTGTCGGAGACGAATCCGAGTGAGAGACGTAGTTGGATCCGAGGGACTAAATATTACAATGTTATAGTGAATCGAATATGTGTTGGTACTGTCTGCGAAATGTTCTGTGAGCAAACTGGTCGAATCATGTTAAGGCAGTGTTATTTGTTTGCATTAATATTGTTTATATATAGTGATTTAATAGATGAATATATAATATTAGCTTTGGCTATTTGACCATTATGAGGAAGTTATAACACATT

Fln Alignment:

AllPineV4_rep_c63513___MAETLGLDLEAFSKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPQVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSQQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQQ
Q9MBF0_______________MAETLGLDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPQVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLEEAFQQLGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSQQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
786		14		85	0.993533
916		83		16	0.999991
1011		95		4	0.997494
1129		5		94	0.998578
1254		4		95	0.997218
1309	88		11		1.0
1409	10		90		0.90298
1458	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain