SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60390

Length: 1164 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60390 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein xyloglucan endotransglucosylase; Pinus pinaster (Maritime pine).	-	-	98%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKM0

Fln msg:

Fln protein: MACLRFQSCCFFVLVFCFWVSNCAEFNDIFEPSWAIDHVMNEGELLKLKLDNFSGAGFASKATYLFGKVGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGDREQRIYLWFDPTADFHSYSFLWNHKQVVFFVDSVPIRVFPNNERLGVPYPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFISTYKGFDIDANEYGLNGESRGVVENGSKWWDRPSHSSLTPLQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF*

Protein Length: 288

Fln nts: GGCCTATACGTCGTGACCTTGGCTGTCATGGGGGTAGTGCAGATAAGCTTTTGTTGAC_-_ATGGCTTGTTTAAGATTTCAGAGCTGCTGCTTTTTCGTTCTGGTTTTTTGCTTCTGGGTATCTAATTGTGCAGAGTTCAATGATATCTTCGAGCCCAGCTGGGCGATTGATCATGTTATGAACGAGGGAGAGCTGTTGAAGCTGAAGCTCGACAACTTTTCTGGCGCTGGCTTTGCTTCCAAGGCAACATACTTGTTTGGAAAAGTAGGGGCGCAGATTAAACTCGTTCCCGGCGACTCTGCGGGAACAGTGACTGCATTTTATATGTCTTCTGAGGGGACACTGCATGACGAATTCGATTTCGAATTCTTGGGAAATGCTTCGGGTGAGCCTTACATTGTGCAGACTAATATCTACTCCAACGGCACTGGCGACAGGGAACAACGCATTTACCTCTGGTTCGACCCCACCGCAGATTTCCATTCCTATTCTTTTCTGTGGAACCACAAGCAAGTTGTATTCTTTGTAGACAGTGTTCCGATTAGGGTATTCCCCAACAACGAGAGGCTGGGAGTCCCATATCCTAAGAAACAGCCCATGAGGGTATCCTCTTCAATCTGGAATGCAGATAACTGGGCTACTCAAGGTGGGCGGCTGAAGATAAACTGGAGCCATTCTCCTTTTATCTCCACTTACAAAGGCTTCGACATTGATGCAAACGAATACGGATTAAATGGAGAATCAAGAGGGGTTGTTGAGAATGGAAGTAAGTGGTGGGATAGGCCCTCTCATTCTTCCCTTACTCCATTACAAAGGCGAATGCTCCGATGGGTACATCGGAACTATATCATCTATGACTACTGCAAGGATTCGACCAGGTTTTCCACTTCGCCACCTGAGTGTGCAGGCCTCCGCTTCTAG___TTGTTCTCTATATTTTCAAATTGCTGTTTAAGGTATAGCTGTGCTTCCTCAATTTTACTATGATAGATATGAAACAGATGAATCTCAATAATGTTTCAATAGTCGTGATGCTATCTCAATAATGGCTCTGTATAGCTTCTGCTAGTTTATTCTTATTTTGTATATTCTTATATTGTATAATATAAAGTGGAAATGTTTATATACTTTCTGAATAATAATACAACTTTTTATTATTATTGTCTTAT

Fln Alignment:

AllPineV4_rep_c63221___MACLRFQSXXXXXXXXXXXVSNCAEFNDIFEPSWAIDHVMNEGELLKLKLDNFSGAGFASKATYLFGKVGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGDREQRIYLWFDPTADFHSYSFLWNHKQVVFFVDSVPIRVFPNNERLGVPYPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFISTYKGFDIDANEYGLNGESRGVVENGSKWWDRPSHSSLTPLQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF
F4MKM0_______________MACLRLQSCCFFVLVFCFWVSNCAEFNDIFEPSWAIDHVMNEGELLKLKLDNFSGAGFASKATYLFGKVGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGDREQRIYLWFDPTADFHSYSFLWNHKQVVFFVDSVPIRVFPNNERVGVPYPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFISTYKGFDIDANEYGLNGESRGVIENGSKWWDRPSHSSLTPLQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
794	4		95		0.99997
1150	93	2			0.983471
1173	8	80	4	4	0.997415
1174	8	54			1.0
1175		91		8	0.999807
1176	9	66		19	1.0
1177	14	52	23	9	1.0
1178	71			23	1.0
1179	15	5	26	5	1.0
1180	11			88	0.999937
1181	16		83		0.994512
1194	20		80		0.995505
1197		80	20		0.995505
1198	60		40		1.0
1199	40	60			1.0
1200	25		50	25	0.995533
1202		75		25	0.996473
1203	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain