SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60363

Length: 525 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene60363
ATGGGGACGGCAGAGAACTTCCGAGCACTCTGCACCGGTGAGATTGGCGTGGGGAAATCCGGCAAGCCTCTGCACTACAAGGGATCCACGTTCCACCGTGTGATCCCTGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGCAAACGCCGGGAAGAATACCAATGGATCGCAGTTCTTTATCTGTACTGCGTCGTGAGCTTGGCTGGACTGAAACATGTGGTGTTCGGTCAGGTGGTGGAGGGCCTTGATATTGTCAAGGCCATCGAGGGTGTGGGATCCTCCAGTGGCAGGACTTCCAAGCCCGTAGTAATTGCTGACTGCGGTCAGCTCTGAACTGCGCTTTAATAATTACTATGGTTAGGTTAGGAAATTTACGAGTTTACTGTTGTGTTGTAATAAGGGTTTCGAGTGGCATGGCCACCCCTGACACCTTTTATCGTATATGTTGCGTATATTCGTCTTTTTAAGTGACTAACGGCAACTATCCGAAACCGAATTCAATCGCAGGACTGCTAAACTCAGC

Ace file of the UniGene sp_v2.0_unigene60363

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lupinus luteus RepID=CYPH_LUPLU	-	-	2.0e-36	59%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine).	-	-	0.0	64%
Blast2go	peptidylprolyl isomerase roc1	-	-	2.91383e-36	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	2.91383e-36	60%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	2.91383e-36	60%
Blast2go	protein binding	GO:0005515	Molecular Function	2.91383e-36	60%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.91383e-36	60%
Blast2go	Cul3-RING ubiquitin ligase complex	GO:0031463	Cellular Component	2.91383e-36	60%
Blast2go	apoplast	GO:0048046	Cellular Component	2.91383e-36	60%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	2.91383e-36	60%

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	mRNA splicing factor SYF2	IPR013260	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5HIY2

Fln msg: Separated hits, possible frame ERROR between 210 and 213, your sequence is shorter than subject: 112 - 171

Fln protein: MGTAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQGGDFTAANAGKNTNGSQFFICTAS*AWLxxKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL*

Protein Length: 113

Fln nts: ATGGGGACGGCAGAGAACTTCCGAGCACTCTGCACCGGTGAGATTGGCGTGGGGAAATCCGGCAAGCCTCTGCACTACAAGGGATCCACGTTCCACCGTGTGATCCCTGGCTTCATGTGCCAGGGAGGGGATTTCACCGCCGCAAACGCCGGGAAGAATACCAATGGATCGCAGTTCTTTATCTGTACTGCGTCGTGAGCTTGGCTGGAxxxGAAACATGTGGTGTTCGGTCAGGTGGTGGAGGGCCTTGATATTGTCAAGGCCATCGAGGGTGTGGGATCCTCCAGTGGCAGGACTTCCAAGCCCGTAGTAATTGCTGACTGCGGTCAGCTCTGAACTGCGCTTTAATAATTACTATGGTTAGGTTAGGAAATTTACGAGTTTACTGTTGTGTTGTAATAAGGGTTTCGAGTGGCATGGCCACCCCTGACACCTTTTATCGTATATGTTGCGTATATTCGTCTTTTTAAGTGACTAACGGCAACTATCCGAAACCGAATTCAATCGCAGGACTGCTAAACTCAGC

Fln Alignment:

AllPineV4_rep_c63009___TAENFRALCTGEIGVGKSGKPLHYKGSTFHRVIPGFMCQGGDFTA-------------------------------ANAGKNTNGSQFFICTAS*AWLDxKHVVFGQVVEGLDIVKAIEGVGSSSGRTSKPVVIADCGQL
A5HIY2_______________TAENFRALCTGEIGVGKSGKPLHYKGSAFHRVIPGFMCQGGDFTAGNGTGGESIYGNKFPDENFVKKHTGPGILSMANAGKNTNGSQFFICTAKTEWLDxKHVVFGQVVEGLDVVKAIEGVGSSSGRTSKPVVIADCGQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain