SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60356

Length: 1241 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60356 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase 3 n=1 Tax=Actinidia eriantha RepID=C0IRG2_ACTER	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNJ5

Fln msg:

Fln protein: MASLSMQSCFLILALCFWASHCAQFNDIFEPSWATDHVMYEGELLKLKLDNISGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGKREQRIYLWFDPTADFHSYSFLWNHNQVVFFVDSVPIRVFPNNERLGVPYPKSQPMRVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNAESGVNETGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF*

Protein Length: 286

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGGGCCAGCGTAATATAAAGTCGGAGCAGAGGCCTATATGGGGACACTGGTTCTGTTGGGTAGCAGCGTAGTGCAGATAAGCTGTTGTTAAT_-_ATGGCTTCTTTGAGTATGCAGAGCTGCTTCTTAATTCTGGCTCTTTGCTTCTGGGCATCCCATTGTGCACAGTTTAATGATATCTTCGAGCCCAGCTGGGCGACAGATCATGTTATGTATGAGGGAGAGCTGTTGAAGCTTAAGCTGGACAATATTTCCGGGGCTGGCTTTGCTTCCAAGGCAACATATTTGTTTGGAAAAGCAGGGGCACAGATTAAGCTCGTTCCAGGTGACTCTGCAGGCACAGTTACTGCTTTTTATATGTCTTCTGAGGGGACTCTGCACGACGAATTCGATTTCGAATTCTTGGGAAATGCTTCGGGTGAGCCTTACATTGTGCAGACTAATATCTACTCCAACGGCACTGGCAAGAGGGAACAACGGATTTACCTCTGGTTCGACCCTACGGCAGATTTCCATTCCTATTCTTTTCTGTGGAACCACAACCAAGTTGTATTCTTTGTGGATAGTGTTCCGATTCGGGTATTCCCCAACAACGAGCGGCTGGGAGTCCCATATCCGAAAAGCCAGCCGATGAGAGTATCCTCCTCAATCTGGAATGCAGACGACTGGGCTACACAAGGCGGGCTGGTGAAGACAAACTGGAGCCATTCTCCTTTCATCTCCACTTACAAAAGCTTCGACATTGATGCAAACGAATACGGACTGAATGCAGAATCAGGAGTTAATGAGACTGGAAGTAAGTGGTGGGATATGCCCTCTTATTCTTCCCTCTCTCCACAGCAAAGGCGAATGCTCCGATGGGTGCATCGGAACTACATTATCTATGACTATTGCAAAGATTCAACAAGGTTTTCCACTTCGCCACCTGAGTGTGCAGGCCTCCGTTTCTAG___TCCATTATGTTTTAACATTTCTGAGTGTAGAGCCCTGCTTGCTCAGCTCAATTTTGCTGTTGGTGCTGGCAATGCAACTGATGAATCTCTATGATGTTTCCACACAGACAAAATCATGGTACTATCTCAATGATGCCTCTGGGGATAGCTTCTGCCAGTCATTCTCCTAATGTGTAATATGAAGCCGGAATGTTTATATACATTCTGGCATGATCAGGAATAATGCAATCTTTTTTCCATTGTAATCCCCTGTCATTTTATTGTC

Fln Alignment:

AllPineV4_rep_c62959___MASLSMQSCFL-ILALCFWASHCAQFNDIFEPSWATDHVMYEGELLKLKLDNISGAGFASKATYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGKREQRIYLWFDPTADFHSYSFLWNHNQVVFFVDSVPIRVFPNNERLGVPYPKSQPMRVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNAES-GVNETGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF
A9NNJ5_______________MACVSKQRCFFFILALCFWASNCAEFNDIFEPSWAMDHVMYEGELLKLRLDNISGAGFSSKAAYLFGKAGAQIKLVPGDSAGTVTAFYMSSEGTLHDEFDFEFLGNASGEPYIVQTNIYSNGTGNREQRIYLWFDPTADFHSYSFLWNHNQVVFLVDSVPIRVFPNNERLGVPYPKKQPMKVSSSIWNADDWATQGGLVKTNWSHSPFISTYKSFDIDANEYGLNGESRGVNENGSKWWDMPSYSSLSPQQRRMLRWVHRNYIIYDYCKDSTRFSTSPPECAGLRF

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
527	33		66		0.997452
630		93		2	0.983471
686	96	4			0.99411
687	96	4			0.99411
809	94		5		0.998744
813		94		5	0.998744
814			5	94	0.998744
817		93	6		0.999153
820	6		93		0.999153
822	93		6		0.999153
828		6		93	0.999153
829			6	93	0.999153
831		93	6		0.999153
1170		3	96		0.990463
1175		7	88		1.0
1177		96	3		0.991825
1178		5		90	0.999945
1180		94		5	0.999997
1185		93	4	2	0.973796
1186	95		4		0.996252
1187			95	4	0.996252
1188	95	4			0.996599
1191		95	4		0.99692
1198		2	28		1.0
1199	25	46			1.0
1200	28	61		7	1.0
1201	28	61	7	2	1.0
1202	12	69	2	15	1.0
1203	87		10	2	1.0
1207		26		73	1.0
1209		6	66		1.0
1214	35	64			1.0
1215	35			64	1.0
1217		64	35		1.0
1225			38	61	1.0
1228	87		12		0.992554
1229	12			87	0.992555
1230	87		12		0.992554
1232			12	87	0.992554
1237	14			85	0.993536
1238	14		85		0.993533
1240		85	14		0.993533
1241		85		14	0.993533
1244	80	20			0.995493
1245	80		20		0.995493
1247	80	20			0.995493
1248	66		16		0.988814
1249	20			40	1.0
1253	80	20			0.995498
1254			80	20	0.995498
1255		20		80	0.995494
1256		20	80		0.995494
1257	80	20			0.995494
1260			80	20	0.995498

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain