SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60339

Length: 1017 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60339 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-galactosidase [Helianthus annuus]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	alpha galactosidase	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWJ8

Fln msg: your sequence is shorter than subject: 218 - 399

Fln protein: LGALSRRPIFYSLCEWGVDDPSTWGKKVGNSWRTTPDINNTWTSILNRADLNSKWAEYAGPGGWNDPDMLEVGNSNATTDEYRAHFSLWALMKAPLLIGCDVRSMTLETVKILTNAEVIAVNQDRLGIQGKKVYKHGDLEVWAGPLSDNRIVVILFNRMKSRAAITAKWEDVGLNPSEEVQVRNLWKHKNLRNRRGSLTSSVKPHASKMFIFTRIQK*

Protein Length: 219

Fln nts: TTGGGCGCCTTGTCAAGGCGCCCAATATTTTACTCACTGTGTGAATGGGGAGTAGATGATCCTTCTACTTGGGGAAAAAAAGTTGGAAACAGTTGGAGAACAACACCAGATATTAACAACACTTGGACTAGCATACTTAACAGAGCAGATCTGAACAGTAAATGGGCAGAGTATGCAGGACCAGGTGGATGGAATGATCCGGACATGTTGGAAGTTGGCAACAGCAATGCAACTACAGATGAGTACAGGGCCCATTTCAGCTTATGGGCCCTGATGAAGGCACCATTGTTGATAGGTTGTGACGTGAGGTCGATGACCCTGGAGACCGTGAAGATTTTGACCAATGCAGAGGTGATTGCTGTCAATCAAGATAGATTGGGAATACAAGGTAAAAAGGTCTACAAACACGGCGATCTAGAGGTGTGGGCAGGCCCTCTATCAGATAATCGTATCGTGGTAATTCTGTTCAACAGAATGAAATCGAGAGCTGCAATTACAGCCAAATGGGAAGACGTTGGCCTGAATCCTTCTGAGGAAGTCCAAGTTAGAAACTTATGGAAGCATAAAAATCTGAGGAACCGTAGAGGCAGCCTAACATCATCGGTGAAACCGCACGCGTCGAAAATGTTCATTTTCACTAGAATTCAGAAGTAG___ATCTCTATGAAGGTGGATCCCTGGTTTTTAAACCCAAATTGTTAGATGAATATTTATTACTATTCAGTGAATAAGTTGGCAAAAAAATCCATTTGGTCTATGGTCAAATGGTTTAAGCCTCAAAATAAGGACGTCATTCTTCAAGCGATGTTAAAAATATGTTTATTTAGTAATAACAGTTGTGTTCTCCCTTTTATTACCAGAAGAGTCTTCCCGTATGTTCAATGGATGAGATTTTAGTGGaTGTTCCCATATGTTCAATGaATGAGATTTCTGTGGATGTTTCATGGATGAAATTTGGATAATTTTTTTGATTGTGGAGATATTTTATAAATTCAATAATTTTGATATTAAAACACGCAT

Fln Alignment:

AllPineV4_rep_c62826___SRRPIFYSLCEWGVDDPSTWGKKVGNSWRTTPDINNTWTSILNRADLNSKWAEYAGPGGWNDPDMLEVGNSNATTDEYRAHFSLWALMKAPLLIGCDVRSMTLETVKILTNAEVIAVNQDRLGIQGKKVYKHGDLEVWAGPLSDNRIVVILFNRMKSRAAITAKWEDVGLNPSEEVQVRNLWKHKNLR-NRRGSLTSSVKPHASKMFIFTRI
A9NWJ8_______________TRRPIFYSLCEWGLDVPATWARQIGSSWRTTDDIEDKWESMISRADQNNEFAQYAGPGGWNDPDMLEVGNGNMTPEEYGSHFSIWALMKAPLLIGCDVTSMDKKTYGILSNSEVIAVNQDPLGVQGKKVNKLGDLEVWAGPLSNNRVAVVLLNRSNSRTIITAKWEDIGLNPSAVVRVRNLWRHRELEANHQGSLTASVKPHGCKMYVLTSV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
945	97	2			0.975753
946	97	2			0.977151
1008		11		77	0.968132
1011	88		11		0.923667
1015			11	88	0.92357
1016		11		88	0.923628
1018		12	87		0.992555
1019			85	14	0.993533
1020		85		14	0.993533
1021			83	16	0.994516
1022		83		16	0.994516
1023		80	20		0.995493
1024	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain