SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60271

Length: 687 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60271 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NLD0_PICSI	-	-	6.00036e-42	78%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	peptidyl-prolyl cis-trans isomerase	-	-	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	mRNA splicing factor SYF2	IPR013260	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
390	7		92		0.999664
392	7	88			0.999079
393			7	92	0.999664
394		7	3	88	0.999079
395	3	7		88	0.999079
396	7	3		88	0.999079
397	11			88	1.0
407	7			85	0.99801
477	90			9	0.999872
478		80	14		1.0
482	20		80		1.0
485	5	15		80	1.0
486		20		80	1.0
487	15		5	80	1.0
494	84	5	10		0.999846
497		84	15		1.0
523	78		7	14	0.999974
524	85		14		0.999981
526			21	78	1.0
529	30		69		1.0
530		84	15		0.999986
531	15			84	0.999986
533	15	84			0.999986
536			15	69	0.999985
537	16	16		66	0.999991
538		16	16	66	0.999991
539	16		83		0.999991
540	16			83	0.999991
541		16	83		0.999991
542	16		16	66	0.999991
543		16		83	0.999991
544		16	83		0.999991
545	33		66		1.0
546		33	66		1.0
548	20	80			0.999996
572		33		16	1.0
573		50	50		1.0
578			66	33	1.0
579	50		33	16	1.0
580		66	33		1.0
581	83	16			0.994512
582	16	33	50		1.0
583	16	83			0.994512
585		71	14		0.984337
586	71		28		1.0
587	66		16	16	0.988813
589			71	28	1.0
590			14	85	0.993541
594	42	57			1.0
595			85	14	0.993541
596	80			20	0.995505
597		80		20	0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain