SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60252

Length: 1835 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60252 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=2 Tax=Pinaceae RepID=Q43025_PINBN	-	-	89%
FL-Next	sp=Alcohol dehydrogenase; Fragaria ananassa (Strawberry).	-	-	77%
Blast2go	alcohol dehydrogenase	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P17648

Fln msg:

Fln protein: MQSAQTHKKPFEDQIDPSRNMASSTAGQVITCKAAVAWGPGQPLKIEEVEVAPPQAMEVRIKVYYTALCRTDLVFWEAKGQTPLFPRIFGHEAAGVVESVGEGVTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGCVAKINPKAPLSKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVGLGAAEGARIAGASRIIGIDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKLELDKFITHEVSFADINKSFDYMIKGESLRTVIKVSD*

Protein Length: 403

Fln nts: TACATGGGAGAGATCAAAGAGTGAGCTTTCTTTCCCCACACATGTGGGCATGCAGACACTGACACTGATGCAGCTACGCGTCGCTTACAGAAAGGGATGTTGTTAAGTATTGTGGAATATAAGGAAGCAGACAAAACTGTCTCAGTTACGAGACGAATTTTGAAGCCGATCCTTGAAGGAAAATGATAAGTAGCACTGCAGAGTAGCATTGCAGGCCAAGTTAGTTCATACAAAGCACACGAGATCATTTGGGGAGATCAACTGTTCAAGGAAATAGCCAAGCTCTACTGCAGGCTAAGTTCTCACATTCAAAGACCATTTGGGGAGATCGACCCTGCAAGGAAAACACCAAGCTCTACTGTAAGCGAAGTTGTCGC_-_ATGCAAAGTGCTCAGACGCACAAGAAACCATTTGAAGATCAGATCGATCCTTCAAGAAATATGGCAAGCTCTACTGCAGGCCAAGTTATCACTTGCAAAGCTGCTGTTGCTTGGGGACCTGGGCAGCCTTTGAAGATTGAAGAAGTGGAAGTGGCACCTCCACAAGCAATGGAAGTCAGGATCAAAGTGTATTACACTGCCTTGTGCCGCACAGACCTTGTTTTTTGGGAAGCAAAGGGTCAAACGCCTCTTTTTCCCCGCATCTTTGGACATGAAGCAGCTGGAGTTGTTGAAAGTGTTGGAGAAGGGGTAACTGACCTCAAGCCGGGTGACAGTGTGCTTCCTGTATTTACTGGAGAATGCAAGGAATGCAGACACTGCAAGTCAGAAGAGAGCAACATGTGTGATCTGCTAAGAATTAATACTGAGAGAGGGGTCATGATAAGTGATGGAAAGTCAAGGTTTTCCATCAATGGAAAGCCAATTTACCACTTCCTTGGTACATCGACTTTCAGCGAGTACACTGTTGTGCATGTGGGTTGTGTTGCCAAAATTAATCCTAAGGCTCCTCTTAGCAAAGTCTGTATTCTAAGCTGTGGTGTCTCTACAGGGATGGGTGCTACTTTGAATGTGGGCAAACCAAAGAAGGGTTCGACAGTAGCAATATTCGGCCTAGGCAGTGTTGGGCTTGGTGCGGCCGAAGGCGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAATAGTGACAGATATGAACAAGCGAAACTATTTGGCGTAACGGAATTTATAAACCCTCAAGACTACGAAAAGCCTGTTCAAGAGGTAATCGCGGAAAAAACTAATGGAGGGGTGGACTGCAGCATCGAATGCACAGGAAATGTGAAGGCGATGATTCAAGCCTTCGAGTCCTGCCATGATGGTTGGGGTGTATCGGTTTTAGTGGGAGTCCCTCATTCAGATGCAGTTTTTGCAACCCATCCTATGAATTTCCTGAACGAGAGGACTTTGAAGGGAACTTTCTTTGGAAACTATAAGCCTCGTTCTGATTTGCCAGGCCTTGTAGAGATGTATCTGGATAAGAAACTTGAACTGGATAAATTTATTACTCATGAGGTCTCATTTGCTGATATCAACAAGTCATTTGATTACATGATTAAAGGAGAGAGTCTGAGAACTGTGATTAAAGTGTCTGACTGA___TTACAAGGGAAAGCTAAAGTCACTTAAGTATTAAGTGGCTGATTAAAGGGGAAAGTACGAGTATTGGCTTAATAACTGTGAGAAGTATGTACACAGGTGTATTATCTTAAGTTTAAGATCTATGGGTCTGGCATTTAGATCAGTGACAAGTATGCACACGGTTATAATATATTTATAATATGCTATTATTTTGAATTTAAGTATATATCCTATTTTGACTTGAACATAAATATAATATTTGAACTTTCATCT

Fln Alignment:

AllPineV4_rep_c62129___SSTAGQVITCKAAVAWGPGQPLKIEEVEVAPPQAMEVRIKVYYTALCRTDLVFWEAKGQTPLFPRIFXXXXXXXXXXXXXXVTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGCVAKINPKAPLSKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVXXXXXXXXXXXXXXXXXXIDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKLELDKFITHEVSFADINKSFDYMIKGESLRTVIKVSD
P17648_______________SSTEGKVICCRAAVAWEAGKPLVIEEVEVAPPQANVVRVKILYTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKECDHCKSEESNMCDLLRINTDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCLAKINPQSPLDKVCILSCGISTGLGATLNVRKPKKGSTVAVFGLGAVGLAAAEGARMAGASRIIGVDLNSNRFEEAKKFGITEFVNPKDHKKPVQEVIAELTNGGVDRSIECTGNIQAMIPAFECVHDGWGVAVLVGVPHKDAVFTTHPMNFLNERTLKGTFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKAFDYMLKGEGIRCIITMEE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1234			11	88	0.991528
1526		5		95	0.997749
1569	93		6		0.999453
1712	90		9		0.999872
1740	81	18			1.0
1741	78	21			1.0
1755		10		90	0.90298
1756		10	90		0.90298
1815		75	25		1.0
1858	20		80		0.995493
1868		20		80	0.995493
1870	20	20		60	0.992559
1871		20		80	0.995495
1872		25		75	0.996475
1873		25	75		0.996474
1883	33	66			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain