SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60228

Length: 924 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60228

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pre-mRNA splicing factor, putative	-	-	1.0e-15	40%
FL-Next	tr=HCF107; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	42%
Blast2go	protein high chlorophyll fluorescent 107	-	-	2.35817e-17	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	2.35817e-17	55%
Blast2go	regulation of translation	GO:0006417	Biological Process	2.35817e-17	55%
Blast2go	plastid organization	GO:0009657	Biological Process	2.35817e-17	55%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	2.35817e-17	55%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	2.35817e-17	55%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
241	33		66		0.997453
310	80		20		0.995493
311	80		20		0.995493
312	80		20		0.995493
465		85	14		0.993533
467	85		14		0.993533
551	14			85	0.993534
552	14	85			0.993534

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain