SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60226

Length: 912 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60226

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO	-	-	8.0e-25	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	ring-h2 finger protein atl3c	-	-	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Carotenoid oxygenase	IPR004294	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
327	66		33		0.997464
331	66			33	0.997464
332		66	33		0.997464
334	66	33			0.997464
336		66		33	0.997464
349	33	66			0.997461
350	66	33			0.997476
365		25		75	0.99649
366			25	75	0.99649
372	25	75			0.996481
373	75	25			0.996481
374		25	75		0.996481
375	75			25	0.996481
376	66			33	0.997452
378	66		33		0.997452
379	66	33			0.997452
382		66		33	0.997452
383	66	33			0.997452
386		33	66		0.997452
388		33	66		0.997452
389	33	66			0.997452
461		20	80		0.995496
462	80		20		0.995496
464	20	20			0.99255
469	80	20			0.995505
470	80	20			0.995505
471	80			20	0.995505
472	80			20	0.9955
478	75			25	0.996474
479			25	75	0.996474
481	50	33	16		1.0
482	66		33		1.0
483		16		66	0.988813
484		16		16	0.988814
485	50	16	33		1.0
486	50			50	1.0
487		83	16		0.994512
492		83		16	0.994513
493	83		16		0.994513
495	83	16			0.994513
498	16			83	0.994513
499	83	16			0.994512
500	16		83		0.994512
504		16		83	0.994512
505	16		83		0.994512
531		83	16		0.994523
580		87		12	0.992554
581	87	12			0.992554
584		87	12		0.992554
585	12		87		0.992554
586		12		87	0.992554
593		87		12	0.992554
594	87		12		0.992554
595	87			12	0.992554
596	87	12			0.992554
597	12			87	0.992554
601	12	87			0.992554
611		75	25		1.0
614		75		25	1.0
712			80	20	0.995493
764			80	20	0.995498
766	80	20			0.995498
768		20		80	0.995498

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain