SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60216

Length: 791 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60216

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SN39.1\|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18750, chloroplastic; Flags: Precursor emb\|CAB37460.1\| putative protein [Arabidopsis thaliana] emb\|CAB	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	pentatricopeptide repeat-containing protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA modification	GO:0009451	Biological Process	0.0	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 110 aas, your sequence is shorter than subject: 263 - 795

Fln protein: NSTTILSVLPTFSYLAALQKGKEIHNYILxxGFDSDISVETVFIDIYAKCGGMELACQIFDKMSQANVVSWTTMITGYGMHGYGEDALQLFNRMKEEGMKLDHVTFVAVLFACSHAGLVDEGLQYFEYMKQV*HITLQMEHYECMVDLLFHTGKLYEAQNLNKKMHLKADAGIWAALLNGCLIHRNLELGEYVAARLLEVEPRDAGNYVLLSNVYAAVGRWDDAVKIRMMMKDNGLKRMPGCSWIEVNNKVHAFLAGDRSDTH

Protein Length: 264

Fln nts: CAACTCAACTACCATCTTGAGTGTCCTCCCCACATTTTCCTACTTGGCAGCTCTACAAAAGGGTAAAGAGATCCACAATTACATACTTxxxxxxGGATTTGATTCTGACATTTCTGTTGAGACTGTTTTCATAGACATATATGCAAAGTGTGGAGGTATGGAGTTAGCATGCCAAATATTTGATAAGATGTCTCAAGCTAATGTGGTCTCATGGACTACAATGATTACAGGCTATGGTATGCATGGGTATGGTGAGGATGCTCTCCAACTTTTTAACCGAATGAAAGAGGAAGGCATGAAGCTAGACCATGTCACTTTTGTTGCAGTACTATTTGCTTGCAGCCATGCAGGCTTAGTGGATGAAGGCTTGCAATACTTTGAATACATGAAACAAGTTTAGCATATTACACTTCAGATGGAACACTACGAATGCATGGTTGACCTTCTTTTCCACACCGGGAAACTATATGAAGCGCAAAATTTGAATAAAAAAATGCATTTAAAAGCTGATGCTGGTATATGGGCAGCCTTGCTTAATGGATGTTTAATCCATCGCAACTTGGAGCTAGGAGAGTATGTGGCAGCACGACTCCTTGAAGTAGAGCCCAGAGATGCTGGAAATTATGTTCTATTGTCAAATGTCTATGCTGCAGTTGGCAGGTGGGATGATGCAGTAAAGATAAGAATGATGATGAAAGACAATGGCTTGAAAAGGATGCCAGGATGCAGTTGGATTGAAGTCAACAACAAGGTTCATGCATTTCTTGCTGGAGACAGATCAGATACACATTC

Fln Alignment:

AllPineV4_c62031___NSTTILSVLPTFSYLAALQKGKEIHNYILRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNGFDSDISVETVFIDIYAKCGGMELACQIFDKMSQANVVSWTTMITGYGMHGYGEDALQLFNRMKEEGMKLDHVTFVAVLFACSHAGLVDEGLQYFEYMKQV*HITLQMEHYECMVDLLFHTGKLYEAQNLNKKMHLKADAGIWAALLNGCLIHRNLELGEYVAARLLEVEPRDAGNYVLLSNVYAAVGRWDDAVKIRMMMKDNGLKRMPGCSWIEVNNKVHAFLAGDRS
B8LQA8_______________NSSTLVSVMPVCAHLLALEQGKQIHCYAIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRT

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
266	75		25		0.996473
288	25		75		0.996473
289		25	75		0.996473
291	75			25	0.996473
292			75	25	0.996473
362			80	20	0.995493
653	16		83		0.994512
657	40		40	20	1.0
660		20	80		0.995493
661		40		60	1.0
689	50		50		1.0
706	75		25		0.996473
709	75			25	0.996473
721			75	25	0.996473
729			75	25	0.996473
743		50		50	1.0
747		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain