SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60200

Length: 1041 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60200 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pathogenesis-related thaumatin-like protein [Arabidopsis thaliana] gb\|ACF20472.1\| At5g24620 [Arabidopsis thaliana] gb\|AED93335.1\| pathogenesis-related thaumatin-like protein [Arabidopsis thaliana]	-	-	2.0e-16	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	thaumatin-like protein	-	-	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEF8

Fln msg: Overlapping hits, possible frame ERROR between 597 and 593, your sequence is shorter than subject: 226 - 250

Fln protein: LCATESPAAYKTIRVVNNCAFPVWPATVGSTNFPPTQMKKVGAGESYSWNVDPFWSGSVWGRTGCVFNSEGIGGCDSGDCGGKLVCKDESQDQITAITKAEFELLGGIAKPDTYSVTLENGYNLPMLVVASSAANNISSSRPCESMECRANANVVCPKDLQEKKKGSVVTACNGHFDGYLPSSPAFSKAFKKVCPRAxxxFQSSTICPPSTASYTLIFCPRRPSS*

Protein Length: 227

Fln nts: CTTTGCGCTACAGAGTCACCTGCGGCTTATAAGACGATAAGAGTGGTGAACAACTGTGCATTTCCGGTGTGGCCTGCGACTGTGGGTTCAACTAATTTTCCTCCCACTCAGATGAAGAAAGTGGGAGCAGGAGAGTCATATTCATGGAATGTAGATCCATTCTGGTCGGGATCCGTTTGGGGGCGGACGGGTTGTGTCTTCAATTCCGAAGGGATCGGAGGCTGCGATTCCGGTGATTGTGGAGGAAAGCTGGTGTGCAAAGACGAGAGTCAAGATCAAATCACGGCAATCACTAAAGCTGAGTTCGAACTACTGGGAGGAATAGCGAAGCCCGACACGTATTCGGTTACGTTGGAGAATGGTTACAATCTTCCAATGTTGGTGGTTGCAAGTTCTGCCGCCAATAATATCAGTAGCAGCCGCCCCTGCGAGTCCATGGAGTGCAGAGCCAACGCGAATGTGGTGTGTCCGAAAGATTTGCAAGAGAAGAAGAAAGGGAGCGTCGTTACTGCGTGCAACGGTCATTTCGATGGATATTTGCCGAGTTCCCCGGCGTTCAGCAAGGCATTTAAGAAGGTGTGCCCTCGTGCAxxxxxxxxxTTCCAGAGCAGCACCATATGCCCTCCTTCAACGGCTTCCTACACCCTCATCTTCTGCCCTCGCCGTCCTTCGTCCTGAATATGTGATGTATTGTGTGGGTTTAGCTCCGTTGGGCTTCTCTGGTCTAATCATTCGACTCCAAAGCATTTCTGAACGACCAATTTTTCATGCTCGGTTATGTATACGAATCGCAGATTAAGAGGTTTCTTTCCACACTCATGATTGCAATTGGTGTGTGGCACCAACAACGAATTTGAATTTACTGCACAATTAAGGATACATAGTACTTTTGGTAGCTGCTTCTTCTTTTTTCTCTTCTTTCACAGGCAACGGATTTCAATTTACTGCACAATTGAGGATGTATAGTACTTTTATTAGCTTCTGCTTTTCTCTCTCTTTTCTAATATCATTACGCGCATCAATTTGTTTTTGTACACAATTTT

Fln Alignment:

AllPineV4_c61984___LCATESPAAYKTIRVVNNCAFPVWPATVGSTNFPPTQMKKVGAGESYSWNVDPFWSGSVWGRTGCVFNSEXXXXXXXXXXXGKLVCKDESQDQITAITKAEFELLGGIAKPDTYSVTLENGYNLPMLVVXXXXXXXXXXSRPCESMECRANANVVCPKDLQEKKKGSVVTACNGHFDGYLPSSPAFSKAFKKVCPRAxxFQSSTICPPSTASYTLIFCPRRPS
D5AEF8_______________LSAAESPMVYKTIRVVNNCAFPVWPATVGSTDLPPPQMRKVRAGESYSWKADPFWSGSIWGRTGCVFNSQGIGGCDSGDCGGNLQCKDESH--IMAITKAEFELLGGIAKPDTYSVTLEKGYNLPMSVDPSYAANNISSSRPCESMECTANANVVCPKNLQEKKKGSVVTACNGHYDGYLPSSPAFSKAFQKACPRAxxFRSGTICPPSTASYTLTFCPRRPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain