SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60167

Length: 1053 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60167 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative F-box/kelch-repeat protein [Arabidopsis thaliana] sp\|O49488.1\|FBK93_ARATH RecName: Full=Putative F-box/kelch-repeat protein At4g34170 emb\|CAA17555.1\| putative protein [Arabidopsis thaliana] emb\|CAB80134.1\| putative protein [Arabidopsis thaliana]	-	-	2.0e-05	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 144 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 191 - 374

Fln protein: IRVFRQYSSWTNEGNNKSESSDIILPRLPNEIVLDCLAKVQKANAAAPASILQGMKKNYPPKLFVVIHR*KGF*KTIFL*T*CSLQLGMRGFMLGNLENKTCLPLPICPINVTCSKFVMNRGKIFSIGGLVNSSTSADVRA*GPSLNRWESLPLIKLPRNEPPVASIARKIYVMGGCVDSSYWAEVYDLT*

Protein Length: 192

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCGCGTTCTCCCGTGAAAGAGGGGCAACGAAGGTGATCCAAAGGTGTTCATTATGGTAGTACAAGGTGGTATAATTTCAGCTTCCCAGGGTATTATTTCACGAGATTGGGTTTATTTGGTCTGTGTGTGGTTTGCGTTCTCCAGTGAGAGAGGGCCAATGAAGTTGATTCAAAGATGCCTGTCACGGCAGGACAAGGGTGGTTTCCCACAAAACTTTAGGGTTTACAGGAGACAAGCGCAGTCTTGAAACCCATGGCGCCCGGAATTGTACCATCAATTTCAATAATGAAATAGTAAATCCAGAGCTATGCTGGAGTGATATTAGTTTCAAAAAGGAAACAGTAAATCAGAGTCTTTAGACAGTATTCTTCCTGGACTAATGAAGGAAACAATAAATCTGAGTCTTCAGATATTATTCTACCTAGACTACCCAATGAGATTGTGTTGGATTGCTTGGCCAAAGTTCAAAAGGCTAATGCAGCAGCACCTGCTAGCATTCTCCAAGGTATGAAAAAAAATTATCCTCCCAAACTATTCGTTGTAATTCATCGTTAGAAGGGCTTCTGAAAGACAATCTTTTTGTAAACATAATGTTCTCTGCAATTGGGGATGAGAGGTTTTATGCTTGGAAACCTAGAGAACAAGACATGTTTGCCTCTCCCCATATGCCCCATCAATGTGACATGTTCCAAGTTCGTTATGAACAGAGGGAAGATTTTCTCTATTGGGGGATTGGTGAACTCTTCCACTTCAGCCGATGTGCGTGCCTAGGGCCCCTCCTTGAATAGGTGGGAGTCCCTTCCACTCATCAAGCTTCCTCGGAACGAGCCTCCAGTCGCTAGTATTGCAAGGAAGATTTATGTCATGGGTGGTTGTGTGGATTCTTCATACTGGGCAGAGGTTTATGATCTCACATAGGCCTATGGACTTCTTTGTCTATTCTTTCATCAAAGTTTTTAAATGATGGATTTTGTCGGGACTGTGTCGTGGTGAGTGGGAAGTTGTTGGGATGTGTTATGGGGGTTTGG

Fln Alignment:

AllPineV4_c61897___NNKSESSDIILPRLPNEIVLDCLXXXXXXXXXXXASILQGMKKNYPPKLFVVIHR*KGF*KTIFL*T*CSLQLGMRGFMLGNLENKTCLPLPICPINVTCSKFVMNRGKIFSIGGLVNSSTSADVRA*GPSLNRWESLPLIKLPRNEPPVASIARKIYVMGGC-VDSSYWAEVYD
B8LQX1_______________DSDGESSDIILPGLPNEIALDCLAKVPRLMHQHLLAVSKVWKTVLSSQILNWNSSSKGLPKDYMYVNLMFSAIGDERFYAWNLENKTCLPLPMCPVNVTCAKFVVSRGRLFSIGGLVNSATSADVSAYDPSLNRWECLASLKLPRYEPAVASIGGKIYVMGGCGVDSSDWAEVYD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
651		66	33		0.997452
704		33		66	0.997452
719	75		25		0.996486
938		33	33	33	0.997753
939	33	33	33		0.997753
940	75	25			0.996474
941	66		33		0.997452
954	66			33	0.997464
955	66	33			0.997464
956	33		66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain