SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60145

Length: 721 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60145

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	3.0e-20	63%
FL-Next	sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	32%
Blast2go	protein	-	-	5.26987e-20	75%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
378		33	66		0.997461
379	66		33		0.997461
380		33		66	0.997464
382		33	33	33	0.997671
395	33		33	33	0.997584

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain