SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60078

Length: 405 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene60078
CGTCGTGACCTTGGCTGTCACTCATGTGTTGTACAGGTGGTGGAGGATGGCTATGAATTCTTTGCCAAAAGGCAGCTTGTAACTATCTTTTCAGCTCCTAATTATTGTGGAGAATTTGATAATGCTGGTGCTCTGATGAGTGTTGATGAAAGTCTGATGTGTTCTTTCCAAATTTTGAAGCCAGCTGAGAAAAAGGGAAAGCCTGGATATGGTAGTAGTGTACCACTGCAAGCCACACCACCTCGCAAGGTGAGCTACTATAGAAGCTAGTTTGTTATTCTTGGGGATGATACTTTTGTTCATCGATATTGAACAAATGTTTGCTTTAGGAGCAAAATGCTATATGTTAAGTATGCTTCTATTTTTATTCTACCTTTTGGATATCTCAATAAGTTAGAAGATTGC

Ace file of the UniGene sp_v2.0_unigene60078 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Picea sitchensis RepID=D5AA89_PICSI	-	-	1.0e-28	87%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	serine threonine protein	-	-	1.97533e-34	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	1.97533e-34	82%
Blast2go	regulation of homologous chromosome segregation	GO:0060629	Biological Process	1.97533e-34	82%
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	1.97533e-34	82%
Blast2go	regulation of mitotic sister chromatid segregation	GO:0033047	Biological Process	1.97533e-34	82%
Blast2go	DNA damage checkpoint	GO:0000077	Biological Process	1.97533e-34	82%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	1.97533e-34	82%
Blast2go	cytosol	GO:0005829	Cellular Component	1.97533e-34	82%
Blast2go	mRNA cleavage and polyadenylation specificity factor complex	GO:0005847	Cellular Component	1.97533e-34	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA89

Fln msg: your sequence is shorter than subject: 90 - 325

Fln protein: RRDLGCHSCVVQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGALMSVDESLMCSFQILKPAEKKGKPGYGSSVPLQATPPRKVSYYRS*

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTTGTACAGGTGGTGGAGGATGGCTATGAATTCTTTGCCAAAAGGCAGCTTGTAACTATCTTTTCAGCTCCTAATTATTGTGGAGAATTTGATAATGCTGGTGCTCTGATGAGTGTTGATGAAAGTCTGATGTGTTCTTTCCAAATTTTGAAGCCAGCTGAGAAAAAGGGAAAGCCTGGATATGGTAGTAGTGTACCACTGCAAGCCACACCACCTCGCAAGGTGAGCTACTATAGAAGCTAG___TTTGTTATTCTTGGGGATGATACTTTTGTTCATCGATATTGAACAAATGTTTGCTTTAGGAGCAAAATGCTATATGTTAAGTATGCTTCTATTTTTATTCTACCTTTTGGATATCTCAATAAGTTAGAAGATTGC

Fln Alignment:

AllPineV4_c61622___QVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGALMSVDESLMCSFQILKPAEKKGKPGYGSS-VPLQATPPRK
D5AA89_______________QVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGALMSVDETLMCSFQILKPAEKKGKLGFGSSNLSRPGTPPRK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
277	14		85		0.993533
335		83	16		0.994512
340	16	83			0.994512
341			16	83	0.994512
342		16		83	0.994512
343		16		83	0.994512
344	16			16	0.988813
345	14			85	0.993539
348		85		14	0.993536
349	85	14			0.993537
351	85	14			0.993537
354	85	14			0.993536
355			14	85	0.993536
380			25	75	0.996479

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain