SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59952

Length: 846 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene59952 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] gb\|AAD46034.1\|AC007519_19 F16N3.20 [Arabidopsis thaliana] gb\|AEE32181.1\| MATE efflux family protein [Arabidopsis thaliana]	-	-	1.4013e-45	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	protein transparent testa 12-like	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKL5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 249 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 265 - 500

Fln protein: MASVRNTMMSLDERRRPLLLPSTSSYSPYVQNPSNEQNNEFGVHEYVQLDSLMPTSDSSHRRKELSRTTWSECKAQWKLAAPTIAATVLQYMFTVVAELMAGHLGKFELAALAIACTVVRGLAYGIMLGMGSALETLCGQAFGARQLHMLGIYMQRSIIVLTGAALLLSIPCLFAEPIFKLFGQTTAIAAKSGLLLKWMLPQLFAFAVNVSVQKFLHAQSLVLPIVWISGGVLILHFIFCWITAFKLKLGLIGIVMTHNVSCLE*

Protein Length: 266

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTCCATTTC_-_ATGGCGTCGGTTAGAAACACTATGATGTCCCTAGACGAACGGAGGCGGCCCCTGCTGCTTCCTTCCACTTCCTCTTACTCCCCATATGTGCAGAATCCTTCCAATGAACAAAACAATGAGTTCGGAGTTCACGAGTACGTACAGCTTGACAGCTTAATGCCCACCTCAGATAGCAGTCACAGGCGCAAAGAATTGAGCAGGACAACCTGGTCCGAGTGCAAGGCCCAATGGAAGCTTGCAGCTCCCACTATAGCTGCCACTGTCTTGCAGTATATGTTTACTGTTGTGGCAGAATTAATGGCAGGACACTTGGGGAAGTTCGAGTTGGCTGCATTGGCCATTGCCTGCACTGTTGTTAGAGGATTGGCTTATGGAATCATGCTAGGAATGGGAAGTGCTCTAGAAACACTTTGTGGACAAGCTTTTGGAGCAAGACAATTGCATATGCTTGGGATCTACATGCAACGGTCAATCATCGTACTCACAGGAGCTGCACTTTTATTGTCCATTCCATGCCTTTTTGCAGAACCTATATTCAAACTGTTTGGCCAAACAACTGCCATTGCTGCTAAGTCAGGACTTCTCTTGAAATGGATGCTTCCCCAACTGTTTGCATTTGCAGTAAATGTATCTGTTCAGAAGTTTTTACATGCACAGAGTTTAGTCTTACCTATAGTTTGGATCTCGGGAGGAGTATTAATCTTGCACTTTATATTCTGTTGGATAACTGCCTTCAAACTAAAACTAGGCCTCATTGGTATTGTCATGACACACAATGTATCGTGCCTGGAATGATGAGGCTGCATGCT

Fln Alignment:

AllPineV4_c61313___SNEQNNEFG---VHEYVQLDSLMPTSDSSHRRKELSRTTWSECKAQWKLAAPTIAATVLQYMFTVVAELMAGHLGKFELAALAIACTVVRGLAYGIMLGMGSALETLCGQAFGARQLHMLGIYMQRSIIVLTGAALLLSIPCLFAEPIFKLFGQTTAIAAKSGLLLKWMLPQLFAFAVNVSVQKFLHAQSLVLPIVWISGGVLILHFIFCWITAFKLKLGLIGIVMTHNVS
B8LKL5_______________NEEESGKYGDDLPHRYDFPDDRRPITDC----RSLANGCWEESKKLWYLSGPAIFTSVCQYSLGALTQTFAGHIGELELAAVSIENSVIAGLSFGIMMGMGSALETLCGQSVGARRLDLLGLYMQRSWIILLSTALIMSLIYIFATPILVLIGQQKDIADMAGKFAVWMLPQLFAYAMNFPLAKFLQAQSKVMVMSIIAGCALVVHVLLSWILIFKVGWGLPAAALVLNLS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
289			75	25	0.996473
320	33			33	0.997753
373		33		66	0.997471
482	33	66			0.997452
485	66			33	0.997452
593			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain