SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59945

Length: 486 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene59945
AATGTAGTACAATGCACAAAATCAGGAAGCTCGACAGAGAAGGGTCCTACAGCTGCAGATGATGTTGGACCTCTTGGCACATGCTTCTCTGTGTTGCTCTCCTCAGTGCCAATATACAAATTGCCGCAGAGTAAAAGGGCTTTTTCGTCATGGAAGACAGTGTAAAACTCGTGCTTCTGGGGGTTGTTCTCTTTGCAAGAAAATGTGGTATCTGTTACAATTACATGGACGGGCTTGCAAAGAATCTGAATGCCGTGTGCCTCACTGCAAGTATGTTATTCCTTTCCTGCTTAAGATTACAGATATTAGCTGTAACCGGAAACAACATAGCCGGCACCATATTAATTTGGATACTGGGATTTTGATCTTTTCTTTGATGATTTTTATAGTTATCTTATGTAATGTCTTTGGAAGCATTACAGATTCAGATTCGATCTGTTGTTCTAATGTTCATGACTCTATAGATAGGGACTTTGCGTCTAAGTC

Ace file of the UniGene sp_v2.0_unigene59945

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO	-	-	4.0e-37	69%
FL-Next	sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Blast2go	histone acetyltransferase	-	-	4.62428e-44	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	4.62428e-44	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	4.62428e-44	79%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	4.62428e-44	79%
Blast2go	flower development	GO:0009908	Biological Process	4.62428e-44	79%
Blast2go	histone acetylation	GO:0016573	Biological Process	4.62428e-44	79%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	4.62428e-44	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TAZ-type	IPR000197	-	-
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3		IPR009255	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9C5X9

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 35 aas, your sequence is shorter than subject: 161 - 1697

Fln protein: M*YNAQNQEARQRRVLQLQMMLDLLAHASLCCSPQCQYTNCRRVKGLFRHGRQCKTRASGGCSLCKKMWYLLQLHGRACKESECRVPHCKYVIPFLLKITDISCNRKQHSRHHINLDTGILIFSLMIFIVILCNVFGSITDSDSICCSNVHDSIDRDFASK

Protein Length: 162

Fln nts: AATGTAGTACAATGCACAAAATCAGGAAGCTCGACAGAGAAGGGTCCTACAGCTGCAGATGATGTTGGACCTCTTGGCACATGCTTCTCTGTGTTGCTCTCCTCAGTGCCAATATACAAATTGCCGCAGAGTAAAAGGGCTTTTTCGTCATGGAAGACAGTGTAAAACTCGTGCTTCTGGGGGTTGTTCTCTTTGCAAGAAAATGTGGTATCTGTTACAATTACATGGACGGGCTTGCAAAGAATCTGAATGCCGTGTGCCTCACTGCAAGTATGTTATTCCTTTCCTGCTTAAGATTACAGATATTAGCTGTAACCGGAAACAACATAGCCGGCACCATATTAATTTGGATACTGGGATTTTGATCTTTTCTTTGATGATTTTTATAGTTATCTTATGTAATGTCTTTGGAAGCATTACAGATTCAGATTCGATCTGTTGTTCTAATGTTCATGACTCTATAGATAGGGACTTTGCGTCTAAGTC

Fln Alignment:

AllPineV4_c61296___NAQNQEARQRRVLQLQMMLDLLAHASLCCSPQCQYTNCRRVKGLFRHGRQCKTRASGGCSLCKKMWYLLQLHGRACKESECRVPHCKYVIPFLLKITDISCNRKQ
Q9C5X9_______________NAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGINCKVRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain