SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59934

Length: 571 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene59934
TACAATGAAGTCAAAAGTCGTGGAAAAGATTTCCCACAAAGAGGAAACACAGATGCCATGGTCGGGGGAGCCATCTGGGACATCTTTCGTAGACAGGATGTGCCAAAGTTGCAATGTTATTTGAGGAAGCATTGCAAGGAATTTAGACATATTAATGCCCTTCCTATCGATTCGATTATACATCCCATTCATGATCAGTCATTTTTCTTGAATGAGGAGCATAAGAAAAAGCTGAAGGAAGAATTTTCTGTGGAACCGTGGACATTTCAGCAACACCTTGGCTGACAGTCAGTTTTAATTCCAGCTGGATGCCCTCACCAAGTTAGAAACTTGAAGTCATGTATAAAAGTGGCACTTGACTTTGTTTCACCCGAGAATGTCCAAGAATGCATTCGTTTGACTGAGGAGTTTCGCTTGCTTCCAAAAAATCACAAGGCCAAGGAGGACAAGTTAGAGGTAAAGAAAATGGTACTCTATGCAGCGAGTTCAGCAGTGAGAGAAATTCGGAAATTGACATTGGACCCAAAAGGTGCGAATCTTGGAGTAGAGAACCCAAATTTGACAGACTTGG

Ace file of the UniGene sp_v2.0_unigene59934 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RSE9_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	transcription factor jumonji domain-containing protein	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3		IPR013129	-	-
Sma3	WRC	IPR014977	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABD5

Fln msg: Distance to subject end: 17 aas, your sequence is longer than subject: 171 - 133

Fln protein: MVGGAIWDIFRRQDVPKLQCYLRKHCKEFRHINALPIDSIIHPIHDQSFFLNEEHKKKLKEEFSVEPWTFQQHLG*QSVLIPAGCPHQVRNLKSCIKVALDFVSPENVQECIRLTEEFRLLPKNHKAKEDKLEVKKMVLYAASSAVREIRKLTLDPKGANLGVENPNLTDL

Protein Length: 172

Fln nts: TACAATGAAGTCAAAAGTCGTGGAAAAGATTTCCCACAAAGAGGAAACACAGATGCC_-_ATGGTCGGGGGAGCCATCTGGGACATCTTTCGTAGACAGGATGTGCCAAAGTTGCAATGTTATTTGAGGAAGCATTGCAAGGAATTTAGACATATTAATGCCCTTCCTATCGATTCGATTATACATCCCATTCATGATCAGTCATTTTTCTTGAATGAGGAGCATAAGAAAAAGCTGAAGGAAGAATTTTCTGTGGAACCGTGGACATTTCAGCAACACCTTGGCTGACAGTCAGTTTTAATTCCAGCTGGATGCCCTCACCAAGTTAGAAACTTGAAGTCATGTATAAAAGTGGCACTTGACTTTGTTTCACCCGAGAATGTCCAAGAATGCATTCGTTTGACTGAGGAGTTTCGCTTGCTTCCAAAAAATCACAAGGCCAAGGAGGACAAGTTAGAGGTAAAGAAAATGGTACTCTATGCAGCGAGTTCAGCAGTGAGAGAAATTCGGAAATTGACATTGGACCCAAAAGGTGCGAATCTTGGAGTAGAGAACCCAAATTTGACAGACTTGG

Fln Alignment:

AllPineV4_c61279___FSVEPWTFQQHLG*QSVLIPAGCPHQVRNLKSCIKVALDFVSPENVQECIRLTEEFRLLPKNHKAKEDKLEVKKMVLYAASSAVREIRKLTLDP--KGANLGVENPNLTDL
D5ABD5_______________YQVEPWTFEQHLG-EAVFIPAGCPHQVRNLKSCIKVALNFVSPENLQERNRLEEELRLLPKNHRAREDKLEARKMTLYAVSSAVNEIEKLTLDPNFRAANLGAENPNLTAL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
471	33	66			0.997476
474		66	33		0.997464
475	66			33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain