SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59928

Length: 333 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene59928
AGCAACAGAAGAAGAACGCCAGAGGAGGAGAGATGCTTGCCTGGAACAAGCTAGAACCAAATTAGCAGAGGGAGATGTTAAAGGTGCTATTGAACTCTTCCAGAGAGCAGTGCATATTACACCATCCATGGCAAATGAATTGATTCAGATCCTTAAGACAGAAGGAGTTGAGTTTGTTGTTGCACCTTATGAAGCAGATGCTCAACTGGCTTACTTGTTTAGGTTGGAGCCAGAGAAAGGTGGAATAGTAGCTGTTATCAGTGAAGACAGTGATTTAATGGCATATGGCTGCAATGTGGTTATTTACAAAATGGATCGGTCTGGAGATACATT

Ace file of the UniGene sp_v2.0_unigene59928 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'-3' exonuclease family protein n=4 Tax=Arabidopsis RepID=Q94A33_ARATH	-	-	1.0e-32	66%
FL-Next	sp=Exonuclease 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	47%
Blast2go	protein	-	-	4.29358e-42	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA recombination	GO:0006310	Biological Process	4.29358e-42	74%
Blast2go	mismatch repair	GO:0006298	Biological Process	4.29358e-42	74%
Blast2go	flap endonuclease activity	GO:0048256	Molecular Function	4.29358e-42	74%
Blast2go	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity	GO:0051908	Molecular Function	4.29358e-42	74%
Blast2go	single-stranded DNA specific 5'-3' exodeoxyribonuclease activity	GO:0045145	Molecular Function	4.29358e-42	74%
Blast2go	DNA binding	GO:0003677	Molecular Function	4.29358e-42	74%
Blast2go	protein binding	GO:0005515	Molecular Function	4.29358e-42	74%
Blast2go	nucleus	GO:0005634	Cellular Component	4.29358e-42	74%

Source	InterPros	Term	Type	Identity
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q60GC1

Fln msg: Distance to subject end: 643 aas, your sequence is shorter than subject: 110 - 836

Fln protein: ATEEERQRRRDACLEQARTKLAEGDVKGAIELFQRAVHITPSMANELIQILKTEGVEFVVAPYEADAQLAYLFRLEPEKGGIVAVISEDSDLMAYGCNVVIYKMDRSGDT

Protein Length: 111

Fln nts: AGCAACAGAAGAAGAACGCCAGAGGAGGAGAGATGCTTGCCTGGAACAAGCTAGAACCAAATTAGCAGAGGGAGATGTTAAAGGTGCTATTGAACTCTTCCAGAGAGCAGTGCATATTACACCATCCATGGCAAATGAATTGATTCAGATCCTTAAGACAGAAGGAGTTGAGTTTGTTGTTGCACCTTATGAAGCAGATGCTCAACTGGCTTACTTGTTTAGGTTGGAGCCAGAGAAAGGTGGAATAGTAGCTGTTATCAGTGAAGACAGTGATTTAATGGCATATGGCTGCAATGTGGTTATTTACAAAATGGATCGGTCTGGAGATACATT

Fln Alignment:

AllPineV4_c61267___EEERQRRRDACLEQARTKLAEGDVKGAIELFQRAVHITPSMANELIQILKTEGVEFVVAPYEADAQLAYLFRLEPEKGGIVAVISEDSDLMAYGCNVVIYKMDRSG
Q60GC1_______________ETKRERSRKENLERAKEHESAGNSRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFL----SVNKLVDAVITEDSDLIPFGCSRIIFKMDKFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain