SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59925

Length: 2012 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene59925
ATGGGGGCCGTCGTGACCTTGGCTGTATGGGGGCGCCGTCGAATTTGTCAATAGAAGTTGCGTGCCATCTATTTGACAAATTTCTCTCAGAAAAATCGCTGGAACATCTCAAATTCTTCCCTCTAACCAGGCCAGGCGTTTGCCCTCTCCATCTCAAAAATTCGATTACACGCGAATATTTTGGGCCCTGGTTTTGTCTGAACAATGACGATTGTGGCCTCGCCTGAGAGGAGATCCCGGAAGCAGAAGCCTTTGGTGAGTGAAACCAGTCCCCTGCTGCCCGAGAACCACCAGGATGGCGAAGATGGTGTGCATGAAGGATTCAATGGCGCCTCCTTCTCTGGCGCGGTGTTCAATCTGTCGACTACGGTGGTGGGAGCGGGGATTATGGCTCTGCCTGCTACTATGAAGGTCTTGGGATTGATCCTCGGCAGTCTCCTCATTATCTTCGTTTGCTTCTTGACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGAGCCGGGGCAGCGGCTTCCTATGGCGGCGTCATGGGAGACGCCTTTGGGAAAATTGGGAAGATGATGTTGCAGATCTGCGTGATTATTAACAATTTGGGCATTCTTATTGTTTATATGATAATCATAGGCGATGTGCTATCTGGAACATCATCAAATGGCGTGCATCATGCTGGTATACTTGAAGAATGGTTTGGATTTCATTGGTGGAATGGACGTGTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGCGTCTTTCAAGAGAGTGGATTCTTTGAAATTCACTTCTGCATTATCAGTTGCACTTGCTGTTGTATTTGTTGTGATTACGGCTGGTATTGCGATTGTAAAGTTGTTCAGTGGCACCGTCGAAGCACCAAGATTGTTACCAGATATTGTGGATTTTACTTCGTTCTTGAAGCTTTTCACTGTGGTACCAGTTATTGTGACTGCTTACATCTGTCATTACAATGTTCATTCCATATACAATGAACTTGAGGACCCTTCAGAAATGCAGCCCATTGTTCGCACATCATTGGCATTGTGCTCAATTGTATACATAAGTACAAGCTTTTTTGGCTTTCTTCTATTTGGAGACCAGACCATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCCTACAGTGCTGTGCTGAATGACATTGTTCGTGTGACCTATGTTGTACATCTGATGCTGGTCTTTCCTCTCATTTTTTTTGCCCTGAGACTTAATCTTGATGGGCTTGTCTTTCCAGCAAAAAAGCACCTTGTTTTGGACAATAAGAGGTTCATTTTGATCACTGCTGGGTTAATTGGAGTCGTTTTCCTTGGGGCATCATTCATACCAAGTATCTGGGATGCATTTCAATTCACAGGGGCCACAGCAGCAGTTTGTATTGGGTTCATCTTCCCAGCTTCCATTGCTCTCAGAGACACTCATGGAATCTCAACCAGGAAGGACATATATATCGCATTGTTCATGATTTTTCTGGCAGTAGTTTCAAGTTCAATTGCTATAGTGAGTGACATTAATTCTCTGTTCAACAAAAAGGAGGAAGGCCCTCCACGATCTTGAGAATGATTTTTAATGAGGAGCAGGTGGTGCACCTACATATAAAGATTATTTGGAACAGAACCGAAAAAGGAACGCTGCTTTGGGAATTTGTTTGTAGAATTGTGAAGAGTGGATAAACTTTTGTAAAGCCTTGTATGTTCTGCCATGGTCACTCGGCCTTCTAGTTAATGATGCTACTGTGTTTGTAGTTGTATCATTGGAAAAGGAATATAGTTGATCTCGCGTCGACATATAAGATGATACACTGTGGTTTGCCAAAGAAGTTGTGTTCTACAAACCATATTGTGATAATCAGTATTAGTAGTGTTCACAAATTTCCAAAAAAATGTGTCGCTTTCATTTTTTTGGATGCAAATGATTTGTTCTCTCAATTTGAGAAATAAGACTAAGTTTGTCACTCTATCAAAAAAATTGTG

Ace file of the UniGene sp_v2.0_unigene59925 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9T738_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	amino acid transporter	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium:dicarboxylate symporter	IPR001991	-	0.0	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACG6

Fln msg:

Fln protein: MTIVASPERRSRKQKPLVSETSPLLPENHQDGEDGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLILGSLLIIFVCFLTDASIDILLRFSRAGAAASYGGVMGDAFGKIGKMMLQICVIINNLGILIVYMIIIGDVLSGTSSNGVHHAGILEEWFGFHWWNGRVPILVLTIVLILAPLASFKRVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTVEAPRLLPDIVDFTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYISTSFFGFLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLVFPAKKHLVLDNKRFILITAGLIGVVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTRKDIYIALFMIFLAVVSSSIAIVSDINSLFNKKEEGPPRS*

Protein Length: 465

Fln nts: ATGGGGGCCGTCGTGACCTTGGCTGTATGGGGGCGCCGTCGAATTTGTCAATAGAAGTTGCGTGCCATCTATTTGACAAATTTCTCTCAGAAAAATCGCTGGAACATCTCAAATTCTTCCCTCTAACCAGGCCAGGCGTTTGCCCTCTCCATCTCAAAAATTCGATTACACGCGAATATTTTGGGCCCTGGTTTTGTCTGAACA_-_ATGACGATTGTGGCCTCGCCTGAGAGGAGATCCCGGAAGCAGAAGCCTTTGGTGAGTGAAACCAGTCCCCTGCTGCCCGAGAACCACCAGGATGGCGAAGATGGTGTGCATGAAGGATTCAATGGCGCCTCCTTCTCTGGCGCGGTGTTCAATCTGTCGACTACGGTGGTGGGAGCGGGGATTATGGCTCTGCCTGCTACTATGAAGGTCTTGGGATTGATCCTCGGCAGTCTCCTCATTATCTTCGTTTGCTTCTTGACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGAGCCGGGGCAGCGGCTTCCTATGGCGGCGTCATGGGAGACGCCTTTGGGAAAATTGGGAAGATGATGTTGCAGATCTGCGTGATTATTAACAATTTGGGCATTCTTATTGTTTATATGATAATCATAGGCGATGTGCTATCTGGAACATCATCAAATGGCGTGCATCATGCTGGTATACTTGAAGAATGGTTTGGATTTCATTGGTGGAATGGACGTGTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGCGTCTTTCAAGAGAGTGGATTCTTTGAAATTCACTTCTGCATTATCAGTTGCACTTGCTGTTGTATTTGTTGTGATTACGGCTGGTATTGCGATTGTAAAGTTGTTCAGTGGCACCGTCGAAGCACCAAGATTGTTACCAGATATTGTGGATTTTACTTCGTTCTTGAAGCTTTTCACTGTGGTACCAGTTATTGTGACTGCTTACATCTGTCATTACAATGTTCATTCCATATACAATGAACTTGAGGACCCTTCAGAAATGCAGCCCATTGTTCGCACATCATTGGCATTGTGCTCAATTGTATACATAAGTACAAGCTTTTTTGGCTTTCTTCTATTTGGAGACCAGACCATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCCTACAGTGCTGTGCTGAATGACATTGTTCGTGTGACCTATGTTGTACATCTGATGCTGGTCTTTCCTCTCATTTTTTTTGCCCTGAGACTTAATCTTGATGGGCTTGTCTTTCCAGCAAAAAAGCACCTTGTTTTGGACAATAAGAGGTTCATTTTGATCACTGCTGGGTTAATTGGAGTCGTTTTCCTTGGGGCATCATTCATACCAAGTATCTGGGATGCATTTCAATTCACAGGGGCCACAGCAGCAGTTTGTATTGGGTTCATCTTCCCAGCTTCCATTGCTCTCAGAGACACTCATGGAATCTCAACCAGGAAGGACATATATATCGCATTGTTCATGATTTTTCTGGCAGTAGTTTCAAGTTCAATTGCTATAGTGAGTGACATTAATTCTCTGTTCAACAAAAAGGAGGAAGGCCCTCCACGATCTTGA___GAATGATTTTTAATGAGGAGCAGGTGGTGCACCTACATATAAAGATTATTTGGAACAGAACCGAAAAAGGAACGCTGCTTTGGGAATTTGTTTGTAGAATTGTGAAGAGTGGATAAACTTTTGTAAAGCCTTGTATGTTCTGCCATGGTCACTCGGCCTTCTAGTTAATGATGCTACTGTGTTTGTAGTTGTATCATTGGAAAAGGAATATAGTTGATCTCGCGTCGACATATAAGATGATACACTGTGGTTTGCCAAAGAAGTTGTGTTCTACAAACCATATTGTGATAATCAGTATTAGTAGTGTTCACAAATTTCCAAAAAAATGTGTCGCTTTCATTTTTTTGGATGCAAATGATTTGTTCTCTCAATTTGAGAAATAAGACTAAGTTTGTCACTCTATCAAAAAAATTGTG

Fln Alignment:

AllPineV4_c61262___MTIVASPERRSRKQKPLVSETSPLLPENHQDGEDGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVXXXXXXXXXXIFVCFLTDASIDILLRFSRAGAAASYGGVMGDAFGKIGKMMLQICVIINNLGILIVYMIIIGDVLSGTSSNGVHHAGILEEWFGFHWWNGRXXXXXXXXXXXXXXXASFKRVDSLKXXXXXXXXXXXXXXXXXAGIAIVKLFSGTVEAPRLLPDIVDFTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYISTSFFGFLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLVFPAKKHLVLDNKRFILITAGLIGVVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTRKDIYIALFMIFLXXXXXXXXXXSDINSLFNK
D5ACG6_______________MTIVASPERRSRKQKPLVSESSPLLPEKHQDGEDCVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLVLGILLIIFVGLLTDASIDILLRFSRAGAAASYGGVMGDAFGRIGKMLLQICVIINNLGILIVYMIIIGDVLSGTSSNGLHHAGILEEWFGFHWWNGRVQILLLTTVLILAPLVSFKKVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTIQMPRLLPDIVDHTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYITTSFFGFLLFGDQTMDDILANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLIFPAKKHLVLDNKRFILITAGLIGIVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTNGISTKKDIYLSLFMIFLAVVSSSIAIFSDINSMFKK

SNPs (tot: 76)

Position	A %	C %	G %	T %	Probability
911			10	90	0.90298
915	10			90	0.90298
921		10	90		0.90298
923	10			90	0.90298
925			10	90	0.90298
932	85			14	0.993533
937	71		14	14	0.984337
940	66	33			1.0
948	66		33		1.0
949	66			33	1.0
950	66	33			1.0
952		33	66		1.0
953		84	15		0.999986
954	15			84	0.999986
955		15		84	0.999986
1270	90		10		0.90298
1271		90		10	0.90298
1272		10	90		0.90298
1273	10	90			0.90298
1275	90		10		0.90298
1291			87	12	0.992554
1294		87	12		0.992554
1297		16		66	0.988813
1298	16		66	16	0.988813
1301		16	16	66	0.988813
1302	16		66	16	0.988813
1306	80			20	0.995493
1309			20	80	0.995493
1311		20	80		0.995493
1325		75	25		0.996473
1326	25	75			0.996473
1327	75		25		0.996473
1329			25	75	0.996473
1330	25	75			0.996473
1337			25	75	0.996473
1339	75			25	0.996473
1340	75	25			0.996473
1342		20		80	0.995493
1343		80	20		0.995493
1344	20	80			0.995493
1345	60	20		20	0.992551
1346	60		40		1.0
1348		75	25		0.996474
1349		75		25	0.996474
1350	75		25		0.996474
1351	25			75	0.996473
1352		25		75	0.996473
1353	25	75			0.996473
1354			25	75	0.996473
1355		25		75	0.996473
1360			25	75	0.996473
1361	75			25	0.996473
1362		25		75	0.996473
1365		75	25		0.996473
1501		66	33		0.997452
1504	33			66	0.997452
1507			16	83	0.994512
1510	16	83			0.994512
1513			16	83	0.994512
1515	83			16	0.994512
1517	16		83		0.994512
1519		80	20		0.995493
1520	20	20	60		0.99255
1522		80	20		0.995493
1960	7	21	71		1.0
1965	86	13			0.999973
1967	86	13			0.999973
1969	13			86	0.999973
2017		77		22	0.999999
2018	12	62	25		1.0
2019	25	62	12		1.0
2020		62	37		1.0
2021	75			25	1.0
2022			25	75	1.0
2035	66		33		0.997476
2037		33	66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain