SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59892

Length: 1425 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene59892 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide repeat 11 Fission 1 protein	IPR016543	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU90

Fln msg:

Fln protein: MAKNINSIMDSIGSFFGSGDNLPWTDADIIANCEREFVGEGDGLSKGTGNTESIMRLSWALVHSRRPPDVQRGIAMLEAALDRDGGPLQRREILYLLAVGHYRAEDYPRSRLCLDQALQIAPDFRQALSLRKVLEEKITKDGVIGIGIAVTAVGLVAGGIAAALSRKK*

Protein Length: 170

Fln nts: GTTCTTTACATGGGGGAGCTTTTCGAAACCGTTCTCCATTTCTTAGCCTCCAAGTTACTTTCATTTGTCATTCTTTTGGTTGCCATTGACATATTTCATAGACAGGTAATTTGGGTTCGCTCGCGAAGGCATC_-_ATGGCTAAAAACATCAACAGCATTATGGATTCCATTGGATCGTTCTTCGGATCGGGTGATAACCTGCCGTGGACAGATGCGGACATTATCGCTAACTGTGAGCGTGAATTTGTTGGAGAAGGAGATGGTCTTTCAAAAGGTACAGGTAACACTGAGAGCATAATGAGGTTATCATGGGCGCTGGTACATTCACGACGTCCTCCAGATGTTCAAAGAGGGATAGCAATGTTGGAAGCTGCCTTAGACAGAGATGGTGGCCCTTTGCAGAGAAGGGAGATACTTTATCTTCTTGCAGTAGGTCACTACAGGGCAGAAGATTATCCAAGGAGCAGACTGTGTTTAGACCAAGCATTACAGATAGCTCCAGACTTCAGGCAAGCATTGTCACTGAGGAAAGTACTTGAAGAGAAAATTACAAAAGATGGTGTGATTGGCATAGGTATTGCGGTCACTGCAGTAGGATTAGTTGCTGGTGGGATTGCAGCGGCTTTGTCACGGAAGAAATGA___TATATGAAGCGATAACTGCAACCTGTGTGAATACTGAACTTTTAATAAGCTGTGTGGAACAAAACAATTTGATGTCTCGAGGATCCTGCTTACCTTCAGTTGGCCTGCCCACACAATGTGCATCTTACTAAGGATGTGATGAGTTCACCCTCTAGCAGATATAGAGTAAGTTGCTCATTCATAATTCAGATCCTAATAAGGCCTACAAGAGATTGTCTCAAGCTTCTTCCAATTATACCTGTCTGGCAGGGGTATATGCAGTGCTCACCTCATCTTGGTATTGATTACACTCTTGAAATACCCATATTTACTTCTAGTTCTATATCCGAGGTATTTCGTTCCATTTATCATGCTGTAAATATAATTTGTTCCATTCCAAATGCAGTTATGTATACTTCTGTGATTGCCTCAAGTCACTGAATTTGGAGTTTTGTTTTATCCTCTCTTCTATCGGAGAAATGTTAAGCCTTCTCGGCTTGTGTTGTTTTAGCATTTTATGTACACATGGATTAATACGTTTTGTTTGTAGAGGTCACGACTCCTTTTTGTCTAATTGAGGTATGTTGCTCTACAATTAATACTCATTTCGTGTGATTAATCTGCATACAGCTGTGGCAGAGTTTAATATTTCAAACGAATATGTTTAACCCCAAAAAGAAGCCTTCCCTCTTGAGTAAGCCTCCAATGGAGAAAGTCGCATGTGTCTAACTATCCATCACTGGGAGTGCTTGGAAAGTAAGTACCTTGTATTTTCTATGACAAAACATGGGTGTATACCGGTATTC

Fln Alignment:

AllPineV4_c61194___MAKNINSIMDSIGSFFGSGDNLPWTDADIIANCEREFVGEGDGLSKGTGNTESIMRLSWALVHSRRPPDVQRGIAMLEAALDRDGGPLQRREILYLLAVGHYRAEDYPRSRLCLDQALQIAPDFRQALSLRKVLEEKITKDXXXXXXXXXXXXXXXXXXXXXALSRKK
A9NU90_______________MSRNVNSFLDSIGSFFGSGDNLPWTDADIIANCEREAVGEGAGLSKGTDNSDSIMRLSWALVHSRRSADVQRGIAMLEAALDRDGGPLQKREILYLLAVGHYRAEDYPRSRQFIDQALQIAPDFRQALALRKALEEKITKDGVIGIGIAVTAVGLVAGGIAAALSRKK

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
670	78	5		15	1.0
671	84	15			1.0
672	15		78	5	1.0
678		88		11	0.999952
683	11			88	0.999952
686	11			88	0.999952
688			88	11	0.999952
689	11		88		0.999952
699		88	11		0.999952
704	82	11		5	0.999919
775		84		15	0.999986
878	87		12		0.999973
880		87	12		0.999973
1186	96			3	0.987242
1189		96	3		0.988113
1190		96		3	0.988113
1191	96		3		0.98536
1192	3			96	0.98536
1194	3			96	0.98536
1198	3			96	0.98536
1200		96	3		0.98536
1212		95	4		0.999977
1218		96	3		0.999965
1223		3		96	0.999965
1224		3		96	0.999965
1227	3	96			0.999962
1229	96		3		0.999962
1231	96	3			0.999962
1233		3		96	0.999965
1236	3	96			0.999965
1321		4		95	0.995055
1356		6		93	0.999999
1366		9	90		1.0
1367		9		90	1.0
1369	90	9			1.0
1376	93	6			0.999153
1380	93			6	0.999264
1386	93			6	0.999532
1388		7	89		0.998862
1389	89	10			1.0
1392		92	7		0.999602
1396	92		7		0.999664
1397		7		92	0.999718
1398		8	92		0.999766
1401	92		8		0.999766
1404	88	8			0.999414
1407			8	91	0.999807
1408	8			91	0.999807
1409		9	90		0.999872
1453	33	33	33		0.99775

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain