SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59859

Length: 1014 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene59859

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein LURP-one-related 5 [Arabidopsis thaliana] sp\|Q9SSC7.1\|LOR5_ARATH RecName: Full=Protein LURP-one-related 5 gb\|AAD55470.1\|AC009322_10 Unknown protein [Arabidopsis thaliana] gb\|AAO42075.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50693.1\| unknown	-	-	6.0e-33	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	gtp binding	-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	LURP1-like domain	IPR007612	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
168	66			33	0.997452
285	16		83		0.994512
346	71		28		1.0
367			50	50	1.0
415		85	14		0.993533
423	14		85		0.993533
434		85	14		0.993533
439		14	85		0.993533
603	25		75		1.0
613		12	87		0.992554
615			33	66	1.0
622	50		50		1.0
624	50		50		1.0
672	20			80	0.995493
674			20	80	0.995493
675	80		20		0.995493
676			20	60	0.99255
682		20	80		0.995493
716	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain