SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59839

Length: 407 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene59839
GAACATGAAGCTGCTCCCGGAGACCCAGAAGACTGAACTCAAAGGTGCCCGCAAGTTATTGAATAAGAAAGACAGTACCGAAAAGTGCAGAATACGGATTGCACAAGGCTTGCCATTGACAACTGATAAGCCACAAGTTTTGCCAAAGCCCCAGTCAAAGAGCAGACTAAACCATTGAATGTAAAGCTTTGCACTGAATCTAGAGCAGTTGAAAGAGCCAAATTTGATCACCTAATGGAAGAAAATTCTACTATATGCAGCAACAAAGATTAGAAGAAGAACGACTCCAGAAGCAGCTTGCAGAACTAGAAGAAATTAAGAGATTGAGAAAACGGATGATTCCATATGCTCAACTCATGCCCTTTTTGATCATCCATTCATACCTAATAAGTCTTCAAAGTCTCTAA

Ace file of the UniGene sp_v2.0_unigene59839 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPX2 (targeting protein for Xklp2) family protein [Arabidopsis thaliana] gb\|AED92170.1\| TPX2 (targeting protein for Xklp2) family protein [Arabidopsis thaliana]	-	-	3.0e-07	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%
Blast2go	targeting protein for xklp2 containing protein expressed	-	-	1.09479e-11	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AE75

Fln msg: Overlapping hits, possible frame ERROR between 160 and 145, and possible frame ERROR between 255 and 315, Unexpected STOP codon at 3' end. Distance to subject end: 147 aas, your sequence is shorter than subject: 136 - 583

Fln protein: NMKLLPETQKTELKGARKLLNKKDSTEKCRIRIAQGLPLTTDKPQVLxxxxxxxQTKPLNVKLCTESRAVERAKFDHLMEENSTxxxxxxxxxxxxxxxxxxxxxIKRLRKRMIPYAQLMPFLIIHSYLISLQSL*

Protein Length: 137

Fln nts: GAACATGAAGCTGCTCCCGGAGACCCAGAAGACTGAACTCAAAGGTGCCCGCAAGTTATTGAATAAGAAAGACAGTACCGAAAAGTGCAGAATACGGATTGCACAAGGCTTGCCATTGACAACTGATAAGCCACAAGTTTTGxxxxxxxxxxxxxxxxxxxxxCAGACTAAACCATTGAATGTAAAGCTTTGCACTGAATCTAGAGCAGTTGAAAGAGCCAAATTTGATCACCTAATGGAAGAAAATTCTACTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAATTAAGAGATTGAGAAAACGGATGATTCCATATGCTCAACTCATGCCCTTTTTGATCATCCATTCATACCTAATAAGTCTTCAAAGTCTCTAA

Fln Alignment:

AllPineV4_c61080___ETQKTELKGARKLLNKKDSTEKCRIRIAQGLPLTTDKPQVLPxxxxxEQTKPLNVKLCTESRAVERAKFDHLMEENSTIxxxxxxxxxxxxxxxxxxxxIKRLRKRMIPYAQLMPF
A5AE75_______________EREEELMKKIQKLVEEE---EKQRIPIAQGLPWTTDEPECLIxxxxxENTRPIDLKLHSDLRAVERAEFDHQLEEEEEIxxxxxxxxxxxxxxxxxxxxIKRLRKELVPKAQPMPY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain