SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59755

Length: 276 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene59755
CGTCGTGACCTTGGCTGTCACTCAAGTGATTAAGCCGCTTGTTTACCTTTCAATGTTCTATTTTTTCAACAATCCACGGTCAAGCTTTGCAGAAAATTATGTTGTGACACTTGTCCTTGTCTACTGTGTGGTGGGAATTGCCTATATCTTTGCCATCGCTCTTGATCCAGGATCAGCTCAACTTTGTTCTGTACTTTTTCCCGTTGTTTCTACACTGATGGTAACTCAACCAAATTCAAATGGCATTTTAAAGTATCTGACATACTCAACTTATTC

Ace file of the UniGene sp_v2.0_unigene59755

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative white-brown complex homolog protein 30; AltName: Full=Putative non-intrinsic ABC protein 12; AltName: Full=WBC-related protein 1	-	-	2.0e-16	56%
FL-Next	sp=Putative white-brown complex homolog protein 30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	white-brown-complex abc transporter family	-	-	9.84279e-22	76%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Sodium:dicarboxylate symporter, conserved site	IPR018107	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SJK6

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 91 - 1063

Fln protein: VVTLAVTQVIKPLVYLSMFYFFNNPRSSFAENYVVTLVLVYCVVGIAYIFAIALDPGSAQLCSVLFPVVSTLMVTQPNSNGILKYLTYSTY

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGATTAAGCCGCTTGTTTACCTTTCAATGTTCTATTTTTTCAACAATCCACGGTCAAGCTTTGCAGAAAATTATGTTGTGACACTTGTCCTTGTCTACTGTGTGGTGGGAATTGCCTATATCTTTGCCATCGCTCTTGATCCAGGATCAGCTCAACTTTGTTCTGTACTTTTTCCCGTTGTTTCTACACTGATGGTAACTCAACCAAATTCAAATGGCATTTTAAAGTATCTGACATACTCAACTTATTC

Fln Alignment:

AllPineV4_c60939___VIKPLVYLSMFYFFNNPRSSFAENXXXXXXXXXXXXGIAYIFAIALDPGSAQLCSVLFPVVSTLMVTQPNSNGILKYL
Q9SJK6_______________IMKPLVYLSMFYFFNNPRSSFEDNYIVLVCLVYCVTGMAYIFAILYSPSAAQLLSVLVPVVMTLIANQDKESMVLKYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain