SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59742

Length: 512 nt

UniGene Fasta

>sp_v2.0_unigene59742
CGTCGTGACCTTGGCTGTCACTCAGAGTAATTCAAGCAGCGACATCCGGTTGCATAAAAAATCTCTGTTTTTGGTGGCTGATTTGATTGACCAAGCTATGGAAACTATCAGTCCGTCTCTCCCTTTTCAAGCTGATAAAGAATTATTGAAGTCTGTGGTAGATCTCCTATCAGTGCCTGATCTGGATATGCAAGAAAAGGCATTAGTAGCAATAAGAAGTCTTCTTCAGCTTCACAGTACAAATGCCCAAGTGTTCAAAGATTTTTGCCATTTTGAGTCTGCATTGAAGAGACTTGGATGCGAACTTGAAGAATTGATGTTAGATGATAAATGGGGAGACTTTGCAAGAGATGTTGAAGCTCTCCGCCAAGAAGTGGTTTCCATCTTCTACACAAAATTAGAATGAACATCAAGCTTCTAACTCTTTGTAATTTACAGATTATAATGTTATGTAATATTATTATGATAGTACAGTACCACTGATTATGCTAAGAGAAAAAAATGTATTTACT

Ace file of the UniGene sp_v2.0_unigene59742

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sil1, putative n=1 Tax=Ricinus communis RepID=B9RG44_RICCO	-	-	1.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	nucleotide exchange factor sil1	-	-	9.60119e-34	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-
Sma3	Nucleotide exchange factor Fes1	IPR013918	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNT2

Fln msg: your sequence is shorter than subject: 135 - 359

Fln protein: VVTLAVTQSNSSSDIRLHKKSLFLVADLIDQAMETISPSLPFQADKELLKSVVDLLSVPDLDMQEKALVAIRSLLQLHSTNAQVFKDFCHFESALKRLGCELEELMLDDKWGDFARDVEALRQEVVSIFYTKLE*

Protein Length: 136

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTAATTCAAGCAGCGACATCCGGTTGCATAAAAAATCTCTGTTTTTGGTGGCTGATTTGATTGACCAAGCTATGGAAACTATCAGTCCGTCTCTCCCTTTTCAAGCTGATAAAGAATTATTGAAGTCTGTGGTAGATCTCCTATCAGTGCCTGATCTGGATATGCAAGAAAAGGCATTAGTAGCAATAAGAAGTCTTCTTCAGCTTCACAGTACAAATGCCCAAGTGTTCAAAGATTTTTGCCATTTTGAGTCTGCATTGAAGAGACTTGGATGCGAACTTGAAGAATTGATGTTAGATGATAAATGGGGAGACTTTGCAAGAGATGTTGAAGCTCTCCGCCAAGAAGTGGTTTCCATCTTCTACACAAAATTAGAATGA___ACATCAAGCTTCTAACTCTTTGTAATTTACAGATTATAATGTTATGTAATATTATTATGATAGTACAGTACCACTGATTATGCTAAGAGAAAAAAATGTATTTACT

Fln Alignment:

AllPineV4_c60909___SNSSSDIRLHKKSLFLVADLIDQA--METISPSLPFQADKELLKSVVDLLSVPDLDMQEKALVAIRSLLQLHSTNAQVFKDFCHFESALKRLGCELEELMLDDKWGDFARDVEALRQEVVSIFYTKL
A9NNT2_______________SNDSSDIRLRRKSVFLVADLAEQQFELEASGATRIFEASKEYLNSVVDLTAVPDLDTQEKALVALSRLLQLSDKNVQILRDFGQLELALERLRLQIRELMLDENQGDFLRDIEAQRQEVEFMLHKKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain