SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59586

Length: 797 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene59586 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	high mobility group protein 2 HMG2 [Ipomoea nil]	-	-	9.0e-20	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	transcription factor	-	-	7.75829e-34	86%

Source	InterPros	Term	Type	Identity
Sma3		IPR000135	-	-
Sma3		IPR000910	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
682	1		98		0.936512
683			98	1	0.943291
684	98			1	0.95068
685		0		97	0.997547
688	1	98			0.975179
692		0		95	1.0
694	1	98			0.994062
695	2	97			0.999984
698		0	97		0.968408
703	2		96	1	0.937284
708		1	2	95	0.984611
711	3	4	1	91	0.99995
713	3	95	1		0.999014
722	3	1		94	0.999726
723	4	96			0.999968
725		2		97	0.972772
727	4	95			0.999984
729		6		93	1.0
739	93			6	0.999999
741	90		7		0.999998
745	8	91			1.0
753	84	15			1.0
754		16	72	12	1.0
755	16		84		1.0
758	6		18	75	1.0
760	25			75	1.0
761	27			72	1.0
762	33			66	1.0
763		50	50		1.0
764		60	40		1.0
765		80		20	0.995493
766	75			25	0.996474
767		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain