SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59564

Length: 384 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene59564
CGTCGTGACCTTGGCTGTCACTCAAGGTCAAAGTCTTTGAAAAGGATCTGAGTGCTGTGAAAGGAGAGGGTATGCATAGAGGTCCAATACAAATACAGAGTAATGCCTTGGCAGCTTTGCAAGCAATTGACGGTGCTGTTGCGGAGGAGATAATGGAGAGTGGTTGCCTCACTGGGGATCGAGTCAATGGTTTTGTAGACGGTCTCTCAGGCTCTTGGTTTGTGTGTATTTTGTTCAATGCACATTTTGGGAGCTTCACTCCAAATTGACTGGTCTCATACCAGTATTTATTTTTGACAGAGCAGAAAGTAAATTGTTTTATGGTTGTTCAGGCTTCCACATTATCTGTTGTTAGTTTTGGGTCTGTTTGGCTGTACCATTGCC

Ace file of the UniGene sp_v2.0_unigene59564

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zeaxanthin epoxidase n=2 Tax=Selaginella moellendorffii RepID=D8RMD9_SELML	-	-	8.0e-25	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	zeaxanthin epoxidase	-	-	1.3918e-28	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.14.13.9-	-	1.3918e-28	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.3918e-28	83%
Blast2go	response to red light	GO:0010114	Biological Process	1.3918e-28	83%
Blast2go	xanthophyll biosynthetic process	GO:0016123	Biological Process	1.3918e-28	83%
Blast2go	response to heat	GO:0009408	Biological Process	1.3918e-28	83%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	1.3918e-28	83%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	1.3918e-28	83%
Blast2go	abscisic acid biosynthetic process	GO:0009688	Biological Process	1.3918e-28	83%
Blast2go	zeaxanthin epoxidase [overall] activity	GO:0009540	Molecular Function	1.3918e-28	83%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.3918e-28	83%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Zeaxanthin epoxidase	IPR017079	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSJ1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 179 aas, your sequence is shorter than subject: 89 - 445

Fln protein: S*PWLSLKVKVFEKDLSAVKGEGMHRGPIQIQSNALAALQAIDGAVAEEIMESGCLTGDRVNGFVDGLSGSWFVCILFNAHFGSFTPN*

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTCAAAGTCTTTGAAAAGGATCTGAGTGCTGTGAAAGGAGAGGGTATGCATAGAGGTCCAATACAAATACAGAGTAATGCCTTGGCAGCTTTGCAAGCAATTGACGGTGCTGTTGCGGAGGAGATAATGGAGAGTGGTTGCCTCACTGGGGATCGAGTCAATGGTTTTGTAGACGGTCTCTCAGGCTCTTGGTTTGTGTGTATTTTGTTCAATGCACATTTTGGGAGCTTCACTCCAAATTGACTGGTCTCATACCAGTATTTATTTTTGACAGAGCAGAAAGTAAATTGTTTTATGGTTGTTCAGGCTTCCACATTATCTGTTGTTAGTTTTGGGTCTGTTTGGCTGTACCATTGCC

Fln Alignment:

AllPineV4_c60567___VKVFEKDLSAVKGEGMHRGPIQIQSNALAALQAIDGAVAEEIMESGCLTGDRVNGFVDGLSGSWFVCILFNAHFGSFTP
C0PSJ1_______________VKVLERDVSAIRGEGAYRGPIQIQSNALAALEAIDKDVAEEVMENGCITGDRINGLVDGISGAWYI------KFDTFTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain