SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59511

Length: 968 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene59511 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	gluconolactonase [Pseudomonas mendocina ymp] gb\|ABP84536.1\| gluconolactonase [Pseudomonas mendocina ymp]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	adipocyte plasma membrane-associated protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3		IPR004141	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Strictosidine synthase, conserved region	IPR018119	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN24

Fln msg: Overlapping hits, possible frame ERROR between 145 and 145, your sequence is shorter than subject: 278 - 363

Fln protein: MCMHLNGSWEDWKMVGSTPLGLTVSKSGDVLICMPNQGLLKVNDDQIxxLASEVDGIPIRLANAVVEASDGNVYFSDASTKFGADRFFLDLLEAKPHGRLLKYDPITKKTTVLLDGLGFANGVALSSEEDYILICETWKFRCLKHWIKGEKLGSTEIFIENLPGGPDNINIAADGQSYWIALIGRIRSRPLEFVYRYGILKHIFATYPYLLEWIGFQKNQAMVVKVGEEGEPIISFDDSNGKVMSLVTSAMEVGDYLYLGSLKANFLGRLSADKFRA*

Protein Length: 279

Fln nts: AATGTGTATGCATTTAAATGGGTCATGGGAAGATTGGAAGATGGTTGGAAGCACTCCTCTCGGCCTTACCGTGAGCAAGAGTGGTGATGTTCTTATTTGTATGCCCAACCAGGGCCTGCTGAAGGTTAATGATGATCAAATAxxxxxxTTAGCTTCAGAAGTTGACGGAATTCCGATCAGGTTAGCTAATGCTGTTGTCGAGGCTAGCGATGGAAATGTATATTTCTCAGATGCAAGCACCAAGTTTGGAGCTGACAGATTCTTTCTCGATCTTTTGGAAGCAAAACCCCATGGCAGGCTTCTGAAATATGATCCAATAACAAAGAAGACTACGGTTTTACTTGATGGTCTTGGGTTTGCAAATGGAGTTGCTCTTTCATCAGAGGAAGACTACATCCTCATATGTGAGACATGGAAGTTCAGATGCCTAAAACATTGGATCAAAGGGGAGAAGCTTGGAAGCACAGAAATCTTCATAGAAAATTTGCCTGGAGGTCCTGACAACATCAATATCGCCGCAGACGGGCAGTCATACTGGATTGCTCTCATAGGGCGGATACGTTCGAGACCACTGGAATTTGTGTATAGGTATGGGATCTTGAAGCATATATTTGCAACATATCCATATCTGTTGGAATGGATTGGATTTCAGAAGAACCAGGCTATGGTGGTGAAGGTGGGAGAGGAGGGTGAACCCATCATAAGTTTTGACGATTCCAACGGGAAGGTTATGTCATTGGTTACGTCTGCTATGGAGGTGGGAGACTATCTTTACCTGGGCAGCCTCAAAGCCAATTTTCTTGGCCGATTAAGTGCAGATAAATTTCGCGCTTAAATCTTGTCAGTGTGAAGGATTTAAGTGTGGTGACTGTTAGACCATTTAAAATTTGAGTCCGAAACCCTGCCTAAGCCAGTGATTACTTTCATGCTTCCACATTTAGTGGGATTTCTACCATCTGCTCGCATTTG

Fln Alignment:

AllPineV4_c60458___MHLNGSWEDWKMVGSTPLGLTVSKSGDVLICMPNQGLLKVNDDQIFLLASEVDGIPIRLANAVVEASDGNVYFSDASTKFGADRFFLDLLEAKPHGRLLKYDPITKKTTVLLDGLGFANGVALSSEEDYILICETWKFRCLKHWIKGEKLGSTEIFIENLPGGPDNINIAADGQSYWIALIGRIRSRPLEFVYRYGILKHIFATYPYLLEWIGFQKNQAMVVKVGEEGEPIISFDDSNGKVMSLVTSAMEVGDYLYLGSLKANFLGRLSADKFR
B8LN24_______________MHSNGSWEDWKMVGGAPLGLTVSTSGDVLVCMPNQGLLKVNDDRIFLLASEIDGVPIRFANTVVEASDGSVYFSDSSTKYG--KFFLDLLEAKPYGRLLKYDPITKKTTVLLDGLGFANGVALSSKEDYIIICETWKFRCLKHWIKGEKLGSTEIFIENLPGGPDNINIAADGRSYWIALVGRIRSRTLEFVYRYGILKHIFATYPNLLEWIGFQKRQAMVVKVGEHGQPITSLDDSNGKVMSLVTSAMEVGDYLYLGSLHANFLGRLSADKFR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
732			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain