SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59481

Length: 476 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene59481
CTCTATCAGGATAGGTCTCGTCAGTCAACAGTTTTAAATGTCATCACATCAGGAGGACATCGTGGCATCTTACCTAGCCTAATGCAGAAGGCAATAAGTTCCCTTTCCAGTGAATCATCCTATTGTTCGATATCTTTCCTTGAAGCACTGCTTTCTCTTGTAACAGTTCTAGTTTCTTCTTCTTCTGGCTGCACTGCTTTAAGGGATGTGGGTTTAATGCCAACTTTGCTCCCTCTTCTCAAAGATTTGGATCCACAACACATACACTTGGTAACAGCTGCTGTGCATGTTCTTGAGGCTTTTATGGACTATAGTAATCCTGCTGCAACTTCCTTTAGGGATTTAGGGGGCTTGGATAGCACCATTGCACGCTTGAAGCTTGAAGTCTGCCATTTTGAGGAGAGAGTAAGGAAGCAAAGTGGAGAATCACAATCAAGTTTCAAGGGCAAGTCTCCTCAGAACAATGCTGCTGGTCG

Ace file of the UniGene sp_v2.0_unigene59481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to E3 ubiquitin-protein ligase UPL1 n=1 Tax=Vitis vinifera RepID=UPI00019857DB	-	-	1.0e-30	50%
FL-Next	sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Blast2go	ubiquitin-protein ligase 1	-	-	9.62732e-35	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	9.62732e-35	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	9.62732e-35	79%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	9.62732e-35	79%
Blast2go	membrane	GO:0016020	Cellular Component	9.62732e-35	79%
Blast2go	nucleus	GO:0005634	Cellular Component	9.62732e-35	79%
Blast2go	cytosol	GO:0005829	Cellular Component	9.62732e-35	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	9.62732e-35	79%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GY23

Fln msg: Distance to subject end: 3198 aas, your sequence is shorter than subject: 158 - 3681

Fln protein: LYQDRSRQSTVLNVITSGGHRGILPSLMQKAISSLSSESSYCSISFLEALLSLVTVLVSSSSGCTALRDVGLMPTLLPLLKDLDPQHIHLVTAAVHVLEAFMDYSNPAATSFRDLGGLDSTIARLKLEVCHFEERVRKQSGESQSSFKGKSPQNNAAG

Protein Length: 159

Fln nts: CTCTATCAGGATAGGTCTCGTCAGTCAACAGTTTTAAATGTCATCACATCAGGAGGACATCGTGGCATCTTACCTAGCCTAATGCAGAAGGCAATAAGTTCCCTTTCCAGTGAATCATCCTATTGTTCGATATCTTTCCTTGAAGCACTGCTTTCTCTTGTAACAGTTCTAGTTTCTTCTTCTTCTGGCTGCACTGCTTTAAGGGATGTGGGTTTAATGCCAACTTTGCTCCCTCTTCTCAAAGATTTGGATCCACAACACATACACTTGGTAACAGCTGCTGTGCATGTTCTTGAGGCTTTTATGGACTATAGTAATCCTGCTGCAACTTCCTTTAGGGATTTAGGGGGCTTGGATAGCACCATTGCACGCTTGAAGCTTGAAGTCTGCCATTTTGAGGAGAGAGTAAGGAAGCAAAGTGGAGAATCACAATCAAGTTTCAAGGGCAAGTCTCCTCAGAACAATGCTGCTGGTCG

Fln Alignment:

AllPineV4_c60394___LYQDRSRQSTVLNVITSGGHRGILPSLMQKAIXXXXXXXXXXXXXFLEAXXXXXXXXXXXXXGCTALRXXXXXXXXXXXXXXXXXQHIHLVTAAVHVLEAFMDYSNPAATSFRDLGGLDSTIARLKLEVCHFEERVRKQSGESQSS
Q8GY23_______________LSQDRTRQPTVLTAVTSGGHRGLLSGLMQKAIDSVVCITSKWSLAFAEALLSLVTVLVSSSSGCSAMREAGLIPTLVPLIKDTDPQHLHLVSAAVHILEAFMDYSNPAAALFRDLGGLDDTIFRLKLEVSRTEDDVKEKNCSSDSN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
151	33	66			0.997452
152	33			66	0.997452
154			33	66	0.997452
155		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
174	186	TTC TTC TTC TTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain