SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59188

Length: 302 nt

UniGene Fasta

>sp_v2.0_unigene59188
ACTCAATATTTCTGAGATTTCCAACTGTGACAAAAATGATAATGCAGATGGTCAGGTAGATTCGAAGGCTCTTCACAGGGAACATCATGAAGTGCGTCAGCAATGTGTATGGACACTTATTTCACGCAGCGTTTATAAACACAGGAGCCGAAAGATTCAACTTATGGACGAGATATTGGTCTGTCAGTGCAAGCCTCCTGAAGATGGCAGACTCGGTTGTGGGGATGGATGCTTGAACCGTTTATTGAATATTGAATGTATTCCTGGTACATGTCCTTGTGGAGAAAAGTGTTCTAATCAGC

Ace file of the UniGene sp_v2.0_unigene59188

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Histone-lysine N-methyltransferase ASHH2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	set domain protein	-	-	4.71883e-28	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	carotenoid metabolic process	GO:0016116	Biological Process	4.71883e-28	70%
Blast2go	anther development	GO:0048653	Biological Process	4.71883e-28	70%
Blast2go	regulation of plant-type hypersensitive response	GO:0010363	Biological Process	4.71883e-28	70%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	4.71883e-28	70%
Blast2go	positive regulation of histone methylation	GO:0031062	Biological Process	4.71883e-28	70%
Blast2go	pollen development	GO:0009555	Biological Process	4.71883e-28	70%
Blast2go	secondary shoot formation	GO:0010223	Biological Process	4.71883e-28	70%
Blast2go	embryo sac development	GO:0009553	Biological Process	4.71883e-28	70%
Blast2go	histone H3-K4 methylation	GO:0051568	Biological Process	4.71883e-28	70%
Blast2go	histone H3-K36 methylation	GO:0010452	Biological Process	4.71883e-28	70%
Blast2go	ovule development	GO:0048481	Biological Process	4.71883e-28	70%
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	4.71883e-28	70%
Blast2go	histone methyltransferase activity (H3-K36 specific)	GO:0046975	Molecular Function	4.71883e-28	70%
Blast2go	histone methyltransferase activity (H3-K4 specific)	GO:0042800	Molecular Function	4.71883e-28	70%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2LAE1

Fln msg: Distance to subject end: 741 aas, your sequence is shorter than subject: 100 - 1759

Fln protein: LNISEISNCDKNDNADGQVDSKALHREHHEVRQQCVWTLISRSVYKHRSRKIQLMDEILVCQCKPPEDGRLGCGDGCLNRLLNIECIPGTCPCGEKCSNQ

Protein Length: 101

Fln nts: ACTCAATATTTCTGAGATTTCCAACTGTGACAAAAATGATAATGCAGATGGTCAGGTAGATTCGAAGGCTCTTCACAGGGAACATCATGAAGTGCGTCAGCAATGTGTATGGACACTTATTTCACGCAGCGTTTATAAACACAGGAGCCGAAAGATTCAACTTATGGACGAGATATTGGTCTGTCAGTGCAAGCCTCCTGAAGATGGCAGACTCGGTTGTGGGGATGGATGCTTGAACCGTTTATTGAATATTGAATGTATTCCTGGTACATGTCCTTGTGGAGAAAAGTGTTCTAATCAGC

Fln Alignment:

AllPineV4_c59890___RQQCVWTLISRSVYKHRSRKIQLMDEILVCQCKPPEDGRLGCGDGCLNRLLNIECIPGTCPCGEKCSNQ
Q2LAE1_______________KQKACFKAIKTNQFLHRNRKSQTIDEIMVCHCKPSPDGRLGCGEECLNRMLNIECLQGTCPAGDLCSNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain