SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59131

Length: 255 nt

UniGene Fasta

>sp_v2.0_unigene59131
AATGTGCTATGGGAGGCCTTGACAACAAAGTTCATATCTATGTTGGTGACAGGAATCGGAAGTTCCAGCATGTGTGTGAACTGAAAGGCCATCAGGATTGGATACGTGGTCTAGATTTTTCAATTGCTACAGCAGGGAAGGAAGGGAAGCAGATTTTTGTTGCAAGTTGTTCTCAAGATAGAACCATTAGGATCTGGAAAATATCATGTCGTAGTGCTTTATGTGATGACAGAGAAGAGGCAAAGGGCATGCAAA

Ace file of the UniGene sp_v2.0_unigene59131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJW7_RICCO	-	-	2.0e-17	56%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	56%
Blast2go	elongator protein 2	-	-	4.76101e-21	69%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SJW7

Fln msg: Distance to subject end: 565 aas, your sequence is shorter than subject: 84 - 846

Fln protein: CAMGGLDNKVHIYVGDRNRKFQHVCELKGHQDWIRGLDFSIATAGKEGKQIFVASCSQDRTIRIWKISCRSALCDDREEAKGMQ

Protein Length: 85

Fln nts: AATGTGCTATGGGAGGCCTTGACAACAAAGTTCATATCTATGTTGGTGACAGGAATCGGAAGTTCCAGCATGTGTGTGAACTGAAAGGCCATCAGGATTGGATACGTGGTCTAGATTTTTCAATTGCTACAGCAGGGAAGGAAGGGAAGCAGATTTTTGTTGCAAGTTGTTCTCAAGATAGAACCATTAGGATCTGGAAAATATCATGTCGTAGTGCTTTATGTGATGACAGAGAAGAGGCAAAGGGCATGCAAA

Fln Alignment:

AllPineV4_c59824___AMGGLDNKVHIYVGDRNRKFQHVCELKGHQDWIRGLDFSIATAGK-EGKQIFVASCSQDRTIRIWKISCRSALCD
B9SJW7_______________AMGGLDSKIHLYCGERTGKFIHACELKAHTDWIRSLDFSLPICMEGEGNSIFLVSSSQDKGIRIWKMALRGSLAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain