SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58885

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58885
ACCATTTGGATGCTTTTGCTTGGAGCTATAAGGAGATGAATGGAGTCCACCCTTCAGTCTGTACTCATCACATTTACATTAAAGAAGATTGTAAACCAGTTAGGCAGCCTCAAAGGAAGATGAATCCAGCCCTTAAGGACATTGTGAAAGAAGAATTGCAAAAGTTGCTAGATGCAAAATTCATCTACCCCATCTCTGACAGTGAATGGGTTTCTCCTTTGGTGCTAGTGCCAAAGAAAAACGGGAAGTACATT

Ace file of the UniGene sp_v2.0_unigene58885 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%
Blast2go	uncharacterized protein loc100854171	-	-	6.15918e-28	77%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5CAG9

Fln msg: Distance to subject end: 790 aas, your sequence is shorter than subject: 84 - 1551

Fln protein: HLDAFAWSYKEMNGVHPSVCTHHIYIKEDCKPVRQPQRKMNPALKDIVKEELQKLLDAKFIYPISDSEWVSPLVLVPKKNGKYI

Protein Length: 85

Fln nts: ACCATTTGGATGCTTTTGCTTGGAGCTATAAGGAGATGAATGGAGTCCACCCTTCAGTCTGTACTCATCACATTTACATTAAAGAAGATTGTAAACCAGTTAGGCAGCCTCAAAGGAAGATGAATCCAGCCCTTAAGGACATTGTGAAAGAAGAATTGCAAAAGTTGCTAGATGCAAAATTCATCTACCCCATCTCTGACAGTGAATGGGTTTCTCCTTTGGTGCTAGTGCCAAAGAAAAACGGGAAGTACATT

Fln Alignment:

AllPineV4_c59521___AFAWSYKEMNGVHPSVCTHHIYIKEDCKPVRQPQRKMNPALKDIVKEELQKLLDAKFIYPISDSEWVSPLVLVPKKNG
A5CAG9_______________AIGWSISDLKGINPLICTHHIYLEENAKPVRQPQRRLNPLMQDVVRNEVLKLLDAGIIYPISDSSWVSPTQVVPKKSG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain