SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58849

Length: 362 nt

UniGene Fasta

>sp_v2.0_unigene58849
GGAATAGTAATAATTTTCTGGATTGCTGAGCTTAGACGTTGACGGTAATCCTGTTCCAAGGGTAGCACATTCTGATTGGCTGCATAAAAAGGTCCGGGAAAAGAATGACAAATACCGTCAAAGAAACATTCATGATATGTTTAAATCAAAAACTAAAGATTCTGATCAGCAGTTGAATTCTCCTGTGGCCAATGATTTTATGGATAGTGAGATAGTTGGAGATTTAGAAGATGTGGTTGCCAACAAAGAGAATATACCTCATTTGGGGCCTAGGCCTATAGTTCGTAACTATGAAAGCAACAAAGAACTGTCTGGGAAGAAGATTTATAGTAAACAGACTGACAAAAGTCAGAAGCAGCATC

Ace file of the UniGene sp_v2.0_unigene58849

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KI06_ARALL	-	-	3.0e-17	51%
FL-Next	sp=DNA polymerase; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	51%
Blast2go	dna polymerase epsilon catalytic subunit a	-	-	9.05461e-22	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of long-day photoperiodism, flowering	GO:0048579	Biological Process	9.05461e-22	59%
Blast2go	positive regulation of S phase of mitotic cell cycle	GO:0045750	Biological Process	9.05461e-22	59%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	9.05461e-22	59%
Blast2go	epsilon DNA polymerase complex	GO:0008622	Cellular Component	9.05461e-22	59%
Blast2go	apoplast	GO:0048046	Cellular Component	9.05461e-22	59%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA polymerase epsilon, catalytic subunit A, C-terminal	IPR013697	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KI06

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1001 aas, your sequence is shorter than subject: 120 - 2241

Fln protein: E***FSGLLSLDVDGNPVPRVAHSDWLHKKVREKNDKYRQRNIHDMFKSKTKDSDQQLNSPVANDFMDSEIVGDLEDVVANKENIPHLGPRPIVRNYESNKELSGKKIYSKQTDKSQKQH

Protein Length: 121

Fln nts: GGAATAGTAATAATTTTCTGGATTGCTGAGCTTAGACGTTGACGGTAATCCTGTTCCAAGGGTAGCACATTCTGATTGGCTGCATAAAAAGGTCCGGGAAAAGAATGACAAATACCGTCAAAGAAACATTCATGATATGTTTAAATCAAAAACTAAAGATTCTGATCAGCAGTTGAATTCTCCTGTGGCCAATGATTTTATGGATAGTGAGATAGTTGGAGATTTAGAAGATGTGGTTGCCAACAAAGAGAATATACCTCATTTGGGGCCTAGGCCTATAGTTCGTAACTATGAAAGCAACAAAGAACTGTCTGGGAAGAAGATTTATAGTAAACAGACTGACAAAAGTCAGAAGCAGCATC

Fln Alignment:

AllPineV4_c59480___NPVPRVAHSDWLHKKVREKNDKYRQRNIHDMFKSKTKDSDQQLNSPVANDFMDSEIVGDLEDVVANKENIPHL-GPRPIVRNYESNKELSGKK
D7KI06_______________NPVPRVLHPDWLHKKVREKDDKFRQRKLVDMFSSANKDGGLETDHPVTKDNVE-----DIEDFC--KENRPSVKGPKPIARSYEVNKKQSERE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain