SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58847

Length: 1149 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene58847 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] emb\|CAB88990.1\| putative protein [Arabidopsis thaliana] gb\|AAT41789.1\| At3g44220 [Arabidopsis thaliana] gb\|AAT70476.1\| At3g44220 [Arabidopsis thaliana] gb\|AEE77877.1\| late	-	-	6.0e-32	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	vamp protein sec22	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ42

Fln msg:

Fln protein: MSKGCVTHKDCGRHGHWWEEMPYRRFLRALLALLFIVLFVILVIFLALHPHRPRFYLQNATVSVLNVSDGLLTSSLQFTVVSRNPNDRIGVIYDSLSTYASYLDEQITAEFPLAPFYQDPKDITVLALILYGNSVSLAPVVVEQLSYESQKGSLSLSLRMNGRVRWKVGSWRSGHYHLYVNCEAIVWLSNNGIGGQVPPQPITTCHVEV*

Protein Length: 211

Fln nts: ATTGACGCCAAGCGTCAGAACTGGTAACGCTCTGAGCATTACAGTGCTCATTTGGGGCTTTTCCAGTGATTTGTGGTCAGAATTTTGCATTGGGGACCGAGCAGAAAAATCCAGCC_-_ATGTCCAAGGGATGTGTGACTCACAAGGATTGCGGCCGCCATGGCCACTGGTGGGAAGAGATGCCCTACAGAAGATTCCTGCGGGCTCTGTTGGCGTTGCTCTTCATCGTGCTGTTCGTGATCCTCGTCATCTTCTTAGCGCTGCATCCGCACAGGCCACGGTTTTACCTGCAGAACGCTACGGTCAGCGTGCTGAATGTGAGCGACGGATTGCTCACTTCCAGCCTACAGTTCACCGTGGTGTCGCGCAACCCGAATGACAGGATCGGTGTCATCTACGACAGCCTGAGCACCTACGCCTCGTATCTGGATGAGCAGATCACGGCCGAGTTCCCGTTGGCCCCTTTCTACCAGGACCCCAAGGATATCACCGTCTTGGCTCTCATTTTATATGGGAATTCCGTTTCCTTGGCTCCCGTCGTTGTTGAGCAGCTGAGTTACGAGAGCCAGAAAGGGTCGTTGAGCTTGAGTCTGAGAATGAACGGAAGGGTCCGCTGGAAGGTGGGCAGCTGGAGATCCGGGCATTATCATTTGTATGTCAATTGCGAAGCCATCGTGTGGCTGAGCAATAACGGCATTGGAGGCCAAGTTCCTCCGCAACCCATCACCACATGCCATGTGGAGGTCTAG___GTTTCAGTTAGGAGATTTTGCAATCTATCAGAGTTCCATGGTAATTTAATTCCCCGGTATTCATAGTCAGTCTGCTTCTGGTTTTATTTGTATAATTCCTTCCCCATTCGACTGCCCTGTTGTTTGTGTGAGGCTCTGGATCTGGTGCGCGGGAATGTTAGTCCCACATTGCGATGGGAGGGACCTTTGTTGTATAAGTTTTCCTCTAAGACATGCATAATGTTAGGGATGGCAATTTTAATAATAGCGTAGGGACCTTTGTCTGTATAAGTTTTCCTCTAAGACATGCCCTTATGTTAGGGATGGCATTTTTAATAATAGCGTTTATTATTGTGGGCAACTTATGCTATGGATTCATAATTGATATATAAATATGTGGGGGTAGTATATGTTTATCGACATT

Fln Alignment:

AllPineV4_c59478___KGCVTHKDCGRHGHWWEEMPYXXXXXXXXXXXXXXXXXXXXXXXXLHPHRPRFYLQNATVSVLNVSDGLLTSSLQFTVVSRNPNDRIGVIYDSLSTYASYLDEQITAEFPLAPFYQDPKDITVLALILYGNSVSLAPVVVEQLSYESQKGSLSLSLRMNGRVRWKVGSWRSGHYHLYVNCEAIVWLSNNGIGGQVPPQPITTCHVEV
A9NQ42_______________KGCVTRNDCGRHGSYCEEWRFRRFLQVLLAFLLIVLFVILVIFLALHPHKPRFYLQNATVRELNVSDGLLTSSLQFTVLSHNPNDRIGVLYDSLSIYASYLGQQITDEYRLPHFYQDDNDFNVLNPVLCGNSVPLAAVVCEHLNSERQNGLLSLSLRMDGRIRWKVGTWTSGHYHLNVNCWTISGMGNNDFGGQVPIQQDTRCHVEV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
251			33	66	0.997452
392		25		75	0.996473
611		87		12	0.992554
615	71	28			1.0
635	70		30		1.0
744	11		88		0.999952
756	12		87		0.999964
786		87	12		0.999964
813		12		87	0.999964
850	85			14	0.999981
855		14	85		0.999981
888			80	20	0.999996
973	12			87	0.992554
977			87	12	0.992554
1068	80	20			0.995493
1071	20	20			0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain