SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58841

Length: 300 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58841
TGTGGTTTTTCAAGTGGAAGAGCTCTGGAAAAGTCATCATCATATGGCAGAGTTTGTGCCCAAGACTAGCAAGGCAGGGGATGAAACAATCAGTTTGCATGACTGGGCAGAAGAGAAGACCAATGAAATGGATGAAGCTATAGAAAGGCGAGAGGCAGATGAACTAGAAGAAAGGAGTGATCAGCCTCAAGGAACTTGGGAGGATGTTTATCGCAATGTAAAACGTGTTGAGCGAACAAGAGGTGAGCTGCATGAAAGGGATGATGGTGAGATGGAAAGAACTGGCCAACCTCTATCTAT

Ace file of the UniGene sp_v2.0_unigene58841 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RE01_RICCO	-	-	9.0e-21	49%
FL-Next	tr=Transferase, transferring glycosyl groups, putative; Ricinus communis (Castor bean).	-	-	0.0	49%
Blast2go	udp-glycosyltransferase family protein	-	-	2.68361e-24	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	2.68361e-24	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	0.0	-
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RE01

Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 99 - 935

Fln protein: VVFQVEELWKSHHHMAEFVPKTSKAGDETISLHDWAEEKTNEMDEAIERREADELEERSDQPQGTWEDVYRNVKRVERTRGELHERDDGEMERTGQPLS

Protein Length: 100

Fln nts: TGTGGTTTTTCAAGTGGAAGAGCTCTGGAAAAGTCATCATCATATGGCAGAGTTTGTGCCCAAGACTAGCAAGGCAGGGGATGAAACAATCAGTTTGCATGACTGGGCAGAAGAGAAGACCAATGAAATGGATGAAGCTATAGAAAGGCGAGAGGCAGATGAACTAGAAGAAAGGAGTGATCAGCCTCAAGGAACTTGGGAGGATGTTTATCGCAATGTAAAACGTGTTGAGCGAACAAGAGGTGAGCTGCATGAAAGGGATGATGGTGAGATGGAAAGAACTGGCCAACCTCTATCTAT

Fln Alignment:

AllPineV4_c59470___VFQVEELWKSHHHMAEFVPKTSKAGDETISLHDWAEEKTNEMDEAIERREADELEERSDQPQGTWEDVYRNVKRVERTRGELHERDDGEMERTGQPL
B9RE01_______________LIKVEEQW---NHSQREISSSIASNDESFSYDIWEEEKNIQILNAKKRREEQELKDRTDQPHGTWEEVYRSTKRADRTRNDLHERDEGELERTGQPL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain