SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58838

Length: 379 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58838
GTTTCCATCTCTAGGACCAATCTCTCCGGTATTGTGCCCAAGTTGTGGCATGCAAATATTACCTCCATCGACTTGTCTGGGAACAATCTCAAGGGCACCATACCTTCTTCAATGGGGCGTCTTTTTCATCTAAGGACTTTAGATCTCAGTTCAAATCAGCTGAGTGGATCTATACCTTCCAGTGTTGGAAAGCTTGTGCACCTTGAGAAGCTTGCATTGGCGTCAACAAACTTTCTGGTTCAATACCCTCTTCGCTATCTGAAATGCCATCACTTGTGTTTTTGGATCTGAGTGGCAACCAACTCAATGGCTCTATTCCAGATTACTTGACAGAGTTGAAGAGCCTGCGTTACCTAAACCTCGAAAACAACAATACATT

Ace file of the UniGene sp_v2.0_unigene58838 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat family protein n=2 Tax=Arabidopsis RepID=D7M9F4_ARALL	-	-	2.0e-27	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	leucine-rich repeat family protein	-	-	1.24069e-36	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.24069e-36	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNU9

Fln msg: Overlapping hits, possible frame ERROR between 282 and 225, Distance to subject end: 114 aas, your sequence is shorter than subject: 126 - 634

Fln protein: VSISRTNLSGIVPKLWHANITSIDLSGNNLKGTIPSSMGRLFHLRTLDLSSNQLSGSIPSSVGKLVHLEKLALAxxxxxxxxxxxxxxxxxxxxxDLSGNQLNGSIPDYLTELKSLRYLNLENNNT

Protein Length: 127

Fln nts: GTTTCCATCTCTAGGACCAATCTCTCCGGTATTGTGCCCAAGTTGTGGCATGCAAATATTACCTCCATCGACTTGTCTGGGAACAATCTCAAGGGCACCATACCTTCTTCAATGGGGCGTCTTTTTCATCTAAGGACTTTAGATCTCAGTTCAAATCAGCTGAGTGGATCTATACCTTCCAGTGTTGGAAAGCTTGTGCACCTTGAGAAGCTTGCATTGGCGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATCTGAGTGGCAACCAACTCAATGGCTCTATTCCAGATTACTTGACAGAGTTGAAGAGCCTGCGTTACCTAAACCTCGAAAACAACAATACATT

Fln Alignment:

AllPineV4_c59467___VSISRTNLSGIVPKLWHANITSIDLSGNNLKGTIPSSMGRLFHLRTLDLSSNQLSGSIPSSVGKLVHLEKLALASxxxxxxxxxxxxxxxxxxxLDLSGNQLNGSIPDYLTELKSLRYLNLENNN
B8LNU9_______________VSISRANLSGVVPKLWHANITSIDLSGNNLKGAIPSSMGRLVHLRTLDLSSNQLSGSIPSSVSKLVHLEKLALASxxxxxxxxxxxxxxxxxxxLDLSSNQLNGSIPEYLTELKSLRYLNLENNN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain