SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58770

Length: 271 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene58770
AATGTCTGCCATGCACTTCAGAAAGTGAATTTAAGGAGTAAAGAAATCTGGCATCATCCTAAATCAGAGCATCAGCGCTATTCCAACTCCAAGTGTCGTGAGACTGCTTTAGCTGAGATACTAGAGGTTTTGACAGCTGTCTGTCAGACACACAAACTTCCACTGGCACAAACTTGGGTTCCATTCAGACATTATGAAATACCTATAGGTGAGGTTACGAATACAGGTAGCTGTGGACGGATGTTCTTGGCACTTGAGGATCAGGCATGCT

Ace file of the UniGene sp_v2.0_unigene58770

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NIN like protein 7 [Arabidopsis thaliana] sp\|Q84TH9.2\|NLP7_ARATH RecName: Full=Protein NLP7; Short=AtNLP7; AltName: Full=NIN-like protein 7; AltName: Full=Nodule inception protein-like protein 7 gb\|AAB63621.1\| unknown protein [Arabidopsis thaliana] emb\|CA	-	-	3.0e-12	45%
FL-Next	sp=Protein NLP7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	rwp-rk domain-containing protein	-	-	1.14585e-15	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nitrate	GO:0010167	Biological Process	1.14585e-15	67%
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.14585e-15	67%
Blast2go	stomatal movement	GO:0010118	Biological Process	1.14585e-15	67%
Blast2go	nitrate assimilation	GO:0042128	Biological Process	1.14585e-15	67%
Blast2go	nucleus	GO:0005634	Cellular Component	1.14585e-15	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84TH9

Fln msg: Distance to subject end: 572 aas, your sequence is shorter than subject: 90 - 959

Fln protein: NVCHALQKVNLRSKEIWHHPKSEHQRYSNSKCRETALAEILEVLTAVCQTHKLPLAQTWVPFRHYEIPIGEVTNTGSCGRMFLALEDQAC

Protein Length: 91

Fln nts: AATGTCTGCCATGCACTTCAGAAAGTGAATTTAAGGAGTAAAGAAATCTGGCATCATCCTAAATCAGAGCATCAGCGCTATTCCAACTCCAAGTGTCGTGAGACTGCTTTAGCTGAGATACTAGAGGTTTTGACAGCTGTCTGTCAGACACACAAACTTCCACTGGCACAAACTTGGGTTCCATTCAGACATTATGAAATACCTATAGGTGAGGTTACGAATACAGGTAGCTGTGGACGGATGTTCTTGGCACTTGAGGATCAGGCATGCT

Fln Alignment:

AllPineV4_c59388___VCHALQKVNLRSKEIWHHPKSEHQRYSNSKCRETALAEILEVLTAVCQTHKLPLAQTWVPFRHYEIPIGE-------VTNTGSC-GRMFLALEDQAC
Q84TH9_______________VCKALEAVNLKSSEILDHQTTQICNES----RQNALAEILEVLTVVCETHNLPLAQTWVPCQHGSVLANGGGLKKNCTSFDGSCMGQICMSTTDMAC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain