SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58751

Length: 251 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58751
CGTTGATAGCAGGGAGACTGCCAGGACGAACAGACAATGAAATAAAGAACTACTGGAACAGTCATCTAAGTAAGAAGCTCAGGAAACAAGGCATCGATCCTGTCACCCACAAACCTCTCGAATCAAAACATCATGCCCATGAGAATACTGGAGACAATCATACTCATGAAAATAACATTTCCAGCAGCCTCCAAGATGGACAAGTGCACACTGGGAAAAATGAAGAGGTGGGTCAAGCCAGAGAATACATT

Ace file of the UniGene sp_v2.0_unigene58751 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-MYB transcriptional factor n=1 Tax=Gentiana triflora RepID=A9ZMI4_GENTR	-	-	9.0e-15	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	myb transcription factor	-	-	5.41116e-18	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	5.41116e-18	76%
Blast2go	regulation of gene expression	GO:0010468	Biological Process	5.41116e-18	76%
Blast2go	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	5.41116e-18	76%

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNN4

Fln msg: Distance to subject end: 274 aas, your sequence is shorter than subject: 83 - 390

Fln protein: LIAGRLPGRTDNEIKNYWNSHLSKKLRKQGIDPVTHKPLESKHHAHENTGDNHTHENNISSSLQDGQVHTGKNEEVGQAREYI

Protein Length: 84

Fln nts: CGTTGATAGCAGGGAGACTGCCAGGACGAACAGACAATGAAATAAAGAACTACTGGAACAGTCATCTAAGTAAGAAGCTCAGGAAACAAGGCATCGATCCTGTCACCCACAAACCTCTCGAATCAAAACATCATGCCCATGAGAATACTGGAGACAATCATACTCATGAAAATAACATTTCCAGCAGCCTCCAAGATGGACAAGTGCACACTGGGAAAAATGAAGAGGTGGGTCAAGCCAGAGAATACATT

Fln Alignment:

AllPineV4_c59368___LIAGRLPGRTDNEIKNYWNSHLSKKLRKQGIDPVTHKPLESKHHAHENTGDN
B8LNN4_______________LIAGRMPGRTDNEVKNYWNTHLSKKLISQGIDPRTHKPLSESEDICSSPGNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain