SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58742

Length: 226 nt

UniGene Fasta

>sp_v2.0_unigene58742
TCTTCTGTAACAAGATTGAAACATGCAGGAAGGTAGAGAACATTGTAAAGCGGTTTGATCGAAAGGGCACGGAAATCGTTGTCCTTCCATTCCATGCAGCCGTATCACAAGAATGTCGCATTTCAAGTTTAGAGCATTTCCTTGATTCCCAATCTGAAAAGGCTTTATTTCTCATTTGCACTGACAGAGCTTCTCGGGGCCTTGACATAATTAATGTGGACCATGT

Ace file of the UniGene sp_v2.0_unigene58742

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S033_RICCO	-	-	3.0e-22	65%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 50; Oryza sativa subsp. japonica (Rice).	-	-	0.0	60%
Blast2go	dead-box atp-dependent rna helicase 50-like	-	-	1.50864e-26	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	1.50864e-26	81%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DVX2

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 74 - 641

Fln protein: FCNKIETCRKVENIVKRFDRKGTEIVVLPFHAAVSQECRISSLEHFLDSQSEKALFLICTDRASRGLDIINVDH

Protein Length: 75

Fln nts: TCTTCTGTAACAAGATTGAAACATGCAGGAAGGTAGAGAACATTGTAAAGCGGTTTGATCGAAAGGGCACGGAAATCGTTGTCCTTCCATTCCATGCAGCCGTATCACAAGAATGTCGCATTTCAAGTTTAGAGCATTTCCTTGATTCCCAATCTGAAAAGGCTTTATTTCTCATTTGCACTGACAGAGCTTCTCGGGGCCTTGACATAATTAATGTGGACCATGT

Fln Alignment:

AllPineV4_c59358___FCNKIETCRKVENIVKRFDRKGTEIVVLPFHAAVSQECRISSLEHFLDSQSEKALFLICTDRASRGLDIINVDH
Q0DVX2_______________FCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain