SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58663

Length: 307 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58663
AAACAACCAACAGAATTCTTCTGCAAGACGTTGACTGCAAGTGATACAAGCACCCATGGTGGCTTCTCAGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTTGATTTTTCAATGCAACCGCCAGCTCAAGAGCTCATGGCCCGAGATTTGCATGACAATGTCTGGACATTTAGACATATCTATCGTGGTCAGCCAAAAAGGCATCTTCTAACAACAGGATGGAGTGTATTTGTCAGTGCAAAGAGACTTGTTGCTGGTGATTCTGTTGTTTTTATAAGGGATGAGAAATCACAACTACATT

Ace file of the UniGene sp_v2.0_unigene58663 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9RR61_RICCO	-	-	93%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	77%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	95%
Blast2go	leaf development	GO:0048366	Biological Process	95%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	95%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	95%
Blast2go	DNA binding	GO:0003677	Molecular Function	95%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	95%
Blast2go	nucleus	GO:0005634	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: Distance to subject end: 649 aas, your sequence is shorter than subject: 102 - 919

Fln protein: KQPTEFFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELMARDLHDNVWTFRHIYRGQPKRHLLTTGWSVFVSAKRLVAGDSVVFIRDEKSQLH

Protein Length: 103

Fln nts: AAACAACCAACAGAATTCTTCTGCAAGACGTTGACTGCAAGTGATACAAGCACCCATGGTGGCTTCTCAGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTTGATTTTTCAATGCAACCGCCAGCTCAAGAGCTCATGGCCCGAGATTTGCATGACAATGTCTGGACATTTAGACATATCTATCGTGGTCAGCCAAAAAGGCATCTTCTAACAACAGGATGGAGTGTATTTGTCAGTGCAAAGAGACTTGTTGCTGGTGATTCTGTTGTTTTTATAAGGGATGAGAAATCACAACTACATT

Fln Alignment:

AllPineV4_c59255___FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELMARDLHDNVWTFRHIYRGQPKRHLLTTGWSVFVSAKRLVAGDSVVFIRDEKSQL
E1UHY2_______________FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFLRDENGEL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain