SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58651

Length: 300 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58651
CACGTGTTTACAAAATAGTTCATCCAAATGTGGGTTCATGGAATGCACTGATTGCAGGGTATGCTATGCATGGCTGTGGCAGTGACGCCCTCGAACTAATGAACAAATGCAGCAGAGTGGGGTGAAACTTAACCATATCACCTTAATTGGTGTTCTAACAGCGTGCTCGCATGCAGGTTTAGTGAATCAAGGTCGAAAGTACTTTGATTGCATGAGTCACTACTATCACATTACACCTACAATAGAGCACTATGGATGCATGGTTGACCTACTTGGACGTGCTGGCTTGTTGAATGAGGC

Ace file of the UniGene sp_v2.0_unigene58651 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	pentatricopeptide repeat-containing	-	-	2.14932e-24	78%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Overlapping hits, possible frame ERROR between 122 and 104, Distance to subject end: 216 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 99 - 312

Fln protein: RVYKIVHPNVGSWNALIAGYAMHGCGSDALELMxxxxxxxxKLNHITLIGVLTACSHAGLVNQGRKYFDCMSHYYHITPTIEHYGCMVDLLGRAGLLNE

Protein Length: 100

Fln nts: CACGTGTTTACAAAATAGTTCATCCAAATGTGGGTTCATGGAATGCACTGATTGCAGGGTATGCTATGCATGGCTGTGGCAGTGACGCCCTCGAACTAATGxxxxxxxxxxxxxxxxxxxxxxxxAAACTTAACCATATCACCTTAATTGGTGTTCTAACAGCGTGCTCGCATGCAGGTTTAGTGAATCAAGGTCGAAAGTACTTTGATTGCATGAGTCACTACTATCACATTACACCTACAATAGAGCACTATGGATGCATGGTTGACCTACTTGGACGTGCTGGCTTGTTGAATGAGGC

Fln Alignment:

AllPineV4_c59242___NVGSWNALIAGYAMHGCGSDALELMNxxxxxxVKLNHITLIGVLTACSHAGLVNQGRKYFDCMSHYYHITPTIEHYGCMVDLLGRAGLLNE
D5ADG9_______________NVVSWNAMIVGYGMHGHGEDALVLFTxxxxxxVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain