SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58579

Length: 196 nt

UniGene Fasta

>sp_v2.0_unigene58579
GAATAATTCTAGCAGTGACAGGTACTGTGATCGGCTTGATTATTTTTGAAACAGGCCTTTGGTGGGCTTGTTGGATGTATAGTCGTAGGTTTAGGAGTTCATCAGCCCAGTACACTCTTCTGGAATATGCCTCTGGAGCTCCAGTCCAGTTCTCTTATAAAGAGCTCCAGCAAGCTAACCAAGGATTTCAAAGATA

Ace file of the UniGene sp_v2.0_unigene58579

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lectin protein kinase-like protein [Arabidopsis thaliana] sp\|Q9XID3.1\|Y1343_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Flags: Precursor gb\|AAD39605.1\|AC007454_4 Contains similarity to gi\|479356 protein kin	-	-	2.0e-12	52%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	g-type lectin s-receptor-like serine threonine-protein kinase at1g34300-like	-	-	1.1348e-16	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	1.1348e-16	70%
Blast2go	protein binding	GO:0005515	Molecular Function	1.1348e-16	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.1348e-16	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XID3

Fln msg: Distance to subject end: 340 aas, your sequence is shorter than subject: 64 - 829

Fln protein: IILAVTGTVIGLIIFETGLWWACWMYSRRFRSSSAQYTLLEYASGAPVQFSYKELQQANQGFQR

Protein Length: 65

Fln nts: GAATAATTCTAGCAGTGACAGGTACTGTGATCGGCTTGATTATTTTTGAAACAGGCCTTTGGTGGGCTTGTTGGATGTATAGTCGTAGGTTTAGGAGTTCATCAGCCCAGTACACTCTTCTGGAATATGCCTCTGGAGCTCCAGTCCAGTTCTCTTATAAAGAGCTCCAGCAAGCTAACCAAGGATTTCAAAGATA

Fln Alignment:

AllPineV4_c59157___IILAVTGTVIGLIIFETGLWWACWMYSRRFRSSSAQYTLLEYASGAPVQFSYKELQQANQGFQ
Q9XID3_______________VAVAVIAGLLGLVAVEIGLWWCCCRKNPRFGTLSSHYTLLEYASGAPVQFTYKELQRCTKSFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain